Pinned Repositories
cellSAM
Codebase for "A Foundation Model for Cell Segmentation"
deepcell-applications
Run DeepCell Applications
deepcell-label
Cloud-based data annotation tools for biological images
deepcell-spots
Deep Learning Library for Spot Detection
deepcell-tf
Deep Learning Library for Single Cell Analysis
deepcell-toolbox
Data processing tools associated with deepcell
deepcell-tracking
Track cells and build cell lineages
intro-to-deepcell
An introduction to deepcell and deep learning
kiosk-console
DeepCell Kiosk Distribution for Kubernetes on GKE and AWS
publication-figures
Scripts capable of re-creating figures from Van Valen Lab publications
vanvalenlab's Repositories
vanvalenlab/deepcell-tf
Deep Learning Library for Single Cell Analysis
vanvalenlab/intro-to-deepcell
An introduction to deepcell and deep learning
vanvalenlab/deepcell-label
Cloud-based data annotation tools for biological images
vanvalenlab/cellSAM
Codebase for "A Foundation Model for Cell Segmentation"
vanvalenlab/kiosk-console
DeepCell Kiosk Distribution for Kubernetes on GKE and AWS
vanvalenlab/deepcell-tracking
Track cells and build cell lineages
vanvalenlab/publication-figures
Scripts capable of re-creating figures from Van Valen Lab publications
vanvalenlab/deepcell-spots
Deep Learning Library for Spot Detection
vanvalenlab/deepcell-toolbox
Data processing tools associated with deepcell
vanvalenlab/deepcell-applications
Run DeepCell Applications
vanvalenlab/tcga-utils
Utilities for handling whole slide images from the The Cancer Genome Atlas (TCGA) Dataset
vanvalenlab/kiosk-imageJ-plugin
An ImageJ Plugin for interacting with the DeepCell Kiosk
vanvalenlab/Caliban-2024_Schwartz_et_al
vanvalenlab/kiosk-client
HTTP client utilities for interacting with the Deepcell kiosk
vanvalenlab/deepcell-label-processing
Scripts for processing and converting raw data to label format and creating DCL projects
vanvalenlab/deepcell-retinamask
RetinaNet and RetinaMask models for object detection based on TensorFlow and DeepCell-tf.
vanvalenlab/kiosk-autoscaler
Automatically and efficiently scale Kubernetes GPU resources
vanvalenlab/kiosk-frontend
DeepCell web application built using NodeJS, Express, React, and Webpack.
vanvalenlab/bebi205
Repo for Caltech's Be/Bi 205 course
vanvalenlab/kiosk-redis-consumer
Consume the Kiosk's Redis Events
vanvalenlab/kiosk-tf-serving
TensorFlow Serving with models hosted in the cloud
vanvalenlab/Polaris-2023_Laubscher_et_al
vanvalenlab/deepcell-datasets
React App for hosting curated datasets.
vanvalenlab/deepcell-label-utils
Utilities for spatial cell labels
vanvalenlab/deepcelltypes-demo-08-2023
Executable demo of deepcelltypes model pipeline
vanvalenlab/hubmap-mean-expression-example
Minimal analysis example of data from cytokit+sprm pipeline output
vanvalenlab/kiosk-bucket-monitor
Monitors a cloud bucket and remove stale files.
vanvalenlab/kiosk-data-processing
DEPRECATED: gRPC API for pre- and post-processing data
vanvalenlab/kiosk-redis-janitor
Watches Redis and restarts any stalled jobs.
vanvalenlab/tensorflow-serving-dockerfiles