vaqm2

Postdoc | statistical genetics & bioinformatics

@BioPsyk Copenhagen, Denmark

Pinned Repositories

ibp_pgs_pipelines
Pipelines to calculate polygenic scores for data at Institute of Biological Psychiatry
Language:Nextflow00
advent_of_code_2023
Advent of code 2023
Language:Python00
CodeEval
Solved CodeEval challenges
Language:C++0 1 00
Coursera-Machine-Learning
Solutions to Octave Exercises from Stanford's Machine Learning Course on Coursera
Language:MATLAB0 1 00
custom_gwas
Python Code using CyVCF2 to run custom GWAS models on imputed VCF files
Language:Python0 1 02
finemapping-pipeline
Pipeline to perform finemapping of GWAS results from SAIGE mixed linear model analysis using PolyFun, SuSiE and FINEMAP
Language:Nextflow10
FunctionalProgrammingInScala
Code and coursework for the Functional Programming in Scala course from EPFL offered through Coursera
00
Impute5_pipeline
Imputation pipeline using IMPUTE5
Language:Nextflow1 1 00
impute_paper
Code used for the paper, "Legacy data, whole genome imputation, and the analysis of Psychiatric traits: Lessons from the iPSYCH case-cohort study"
Language:Perl0 1 00
Util
Utility scripts and other one time use code
Language:Perl00

vaqm2's Repositories

vaqm2/finemapping-pipeline
Pipeline to perform finemapping of GWAS results from SAIGE mixed linear model analysis using PolyFun, SuSiE and FINEMAP
Language:Nextflow10
vaqm2/Impute5_pipeline
Imputation pipeline using IMPUTE5
Language:Nextflow1 1 00
vaqm2/advent_of_code_2023
Advent of code 2023
Language:Python00
vaqm2/CodeEval
Solved CodeEval challenges
Language:C++0 1 00
vaqm2/Coursera-Machine-Learning
Solutions to Octave Exercises from Stanford's Machine Learning Course on Coursera
Language:MATLAB0 1 00
vaqm2/custom_gwas
Python Code using CyVCF2 to run custom GWAS models on imputed VCF files
Language:Python0 1 02
vaqm2/FunctionalProgrammingInScala
Code and coursework for the Functional Programming in Scala course from EPFL offered through Coursera
00
vaqm2/ibp_ld_hub
LD Hub pipeline using an in house trait repository
Language:Nextflow00
vaqm2/impute_paper
Code used for the paper, "Legacy data, whole genome imputation, and the analysis of Psychiatric traits: Lessons from the iPSYCH case-cohort study"
Language:Perl0 1 00
vaqm2/Util
Utility scripts and other one time use code
Language:Perl00
vaqm2/magma_pipeline
Pipeline to perform gene level analysis using MAGMA
Language:Nextflow
vaqm2/miamiplot
An R package for creating ggplot2 based miami plots.
Language:R0 0
vaqm2/PolygenicRiskServer
Working repository for development of a server to calculate risk scores
Language:HTML1 0
vaqm2/PRsice-wdl
A cromwell/wdl pipeline for polygenic scoring using PRSice_v2.0
Language:Perl
vaqm2/PythonDataScienceHandbook
Jupyter Notebooks for the Python Data Science Handbook
Language:Jupyter Notebook
vaqm2/sBayesR-wdl
A cromwell/wdl pipeline for polygenic scoring using sBayesR
Language:wdl
vaqm2/shiny_stuff
Practice exercises using R shiny
Language:R
vaqm2/SpringBoard
SpringBoard Foundations of Data Science Workshop
Language:HTML
vaqm2/vaqm2
Config files for my GitHub profile.
vaqm2/vaqm2.github.io
Repository for a personal webpage
Language:HTML
vaqm2/xDx2
Analysis and plotting code for iPSYCH Cross Disorder 2 project
Language:R1 0

vaqm2

Pinned Repositories

ibp_pgs_pipelines

advent_of_code_2023

CodeEval

Coursera-Machine-Learning

custom_gwas

finemapping-pipeline

FunctionalProgrammingInScala

Impute5_pipeline

impute_paper

Util

vaqm2's Repositories

vaqm2/finemapping-pipeline

vaqm2/Impute5_pipeline

vaqm2/advent_of_code_2023

vaqm2/CodeEval

vaqm2/Coursera-Machine-Learning

vaqm2/custom_gwas

vaqm2/FunctionalProgrammingInScala

vaqm2/ibp_ld_hub

vaqm2/impute_paper

vaqm2/Util

vaqm2/magma_pipeline

vaqm2/miamiplot

vaqm2/PolygenicRiskServer

vaqm2/PRsice-wdl

vaqm2/PythonDataScienceHandbook

vaqm2/sBayesR-wdl

vaqm2/shiny_stuff

vaqm2/SpringBoard

vaqm2/vaqm2

vaqm2/vaqm2.github.io

vaqm2/xDx2