varshini712

Clinical Bioinformatics Programmer

NYU Langone HealthNew York

Pinned Repositories

containers
Docker and Singularity containers for Bioinformatics programs
Language:Dockerfile3 4 03
LG-PACT
NYU Langone Genome PACT (Genome Profiling of Actionable Cancer Targets) targeted exome sequencing analysis pipeline.
Language:Nextflow8 3 01
Methylation
DNA methylation for tumor subclassifications by methylation array.
Language:R3 3 11
NGS580-nf
Target exome sequencing analysis for NYU NGS580 gene panel
Language:Nextflow10 3 436
snsxt
bioinformatics pipeline framework for data analysis
Language:Python4 3 363
util
Utility modules for Python
Language:Python6 3 02
cnv-nf
Language:Nextflow2 0 02
epigenetic-clock-shinyApp
DNAm Age calculation using DNA methylation data.
Language:R33
mutect2-nf
GATK4 mutect2
Language:Nextflow0 1 00
snsxt
sns pipeline extension for NGS WES data analysis
Language:Python0 0 00

varshini712's Repositories

varshini712/epigenetic-clock-shinyApp
DNAm Age calculation using DNA methylation data.
Language:R33
varshini712/cnv-nf
Language:Nextflow2 0 02
varshini712/mutect2-nf
GATK4 mutect2
Language:Nextflow0 1 00
varshini712/snsxt
sns pipeline extension for NGS WES data analysis
Language:Python0 0 00
varshini712/nf-test-awspoc
Nextflow pipeline for poc testing
Language:Nextflow