vcastro
Data Scientist @ Mass General Brigham + Population Health Ph.D. student @ Northeastern University
Mass General BrighamBoston, MA
Pinned Repositories
arch-suicide-prediction
Source code for extracting data from the ARCH network sites and running NBC model prediction
CCS
R package with HCUP Clinical Classification Software (CCS) mapping to common diagnosis and procedure codes
cdc_wonder_sandbox
chatstream
Example Shiny for Python app which talks to the OpenAI API
CVrisk
R package to calculate cardiovascular risk scores
icd10us
R package to work with ICD-10-CM and ICD-10-PCS codes
Phecode
R package containing Phecode descriptions and mappings to ICD9 and ICD10 codes
Ri2b2matchcontrols
umls_mssql_load
Load UMLS Metathesaurus Files into a SQL Server Database
vcastro's Repositories
vcastro/CCS
R package with HCUP Clinical Classification Software (CCS) mapping to common diagnosis and procedure codes
vcastro/CVrisk
R package to calculate cardiovascular risk scores
vcastro/umls_mssql_load
Load UMLS Metathesaurus Files into a SQL Server Database
vcastro/Phecode
R package containing Phecode descriptions and mappings to ICD9 and ICD10 codes
vcastro/icd10us
R package to work with ICD-10-CM and ICD-10-PCS codes
vcastro/cdc_wonder_sandbox
vcastro/Ri2b2matchcontrols
vcastro/arch-suicide-prediction
Source code for extracting data from the ARCH network sites and running NBC model prediction
vcastro/chatstream
Example Shiny for Python app which talks to the OpenAI API
vcastro/clearer
repository for clearer
vcastro/clinicaltext
Facilitate Clinical Text Processing Using the tidytext Approach.
vcastro/clinspacy
Clinical Natural Language Processing using spaCy, scispacy, and medspacy
vcastro/CommonDataModel
Definition and DDLs for the OMOP Common Data Model (CDM)
vcastro/ETL-Synthea
Conversion from Synthea CSV to OMOP CDM
vcastro/gatsby-starter-netlify-cms
vcastro/i2b2-docker
i2b2 stack on Docker
vcastro/manhattan_icd9
ICD9 Manhattan Plot
vcastro/Medication_XMLParser
vcastro/modeldb
Run models inside a database using R
vcastro/personalweb
Personal website
vcastro/phenorm_workshop
Materials to demonstrate use of PheNorm in i2b2 demodata
vcastro/Phenotype_Data_Acquisition
The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream
vcastro/PheWAS
The PheWAS R package
vcastro/REDCapR
R utilities for interacting with REDCap
vcastro/Ri2b2casecontrol
vcastro/tidypredict
Run predictions inside the database
vcastro/vcastro.github.io
Public quarto website
vcastro/VictoR
Miscellaneous R functions