Brew Cask install is extremely out of date

Question

Brew Cask install is extremely out of date

Closed this issue 24 days ago · 6 comments

Installing hyphy from brew cask put version 2.5.2 on my machine.

Answer 1 · 2024-10-28T19:25:31.000Z

Do you happen to know which tap you are pulling from? I don't think we've personally updated any homebrew formula since homebrew/science was deprecated about 6 years ago. It's quite possible (and welcome) that someone outside of our lab kindly created a cask, but if I'm directed to where it is I can have a look.

Best,
Steven

Answer 2 · 2024-10-28T19:28:02.000Z

Dear @stevenweaver,

Looks like the relevant formula is for 2.2.7 (current as of six years ago).

https://github.com/brewsci/homebrew-science/blob/master/Formula/hyphy.rb

Best,
Sergei

Answer 3 · 2024-10-28T19:31:37.000Z

Dear @spond,

Yes, but @ethanagon found version 2.5.2, which I couldn't immediately find on Github.

Best,
Steven

Answer 4 · 2024-10-28T20:12:48.000Z

Hi Stephen, This is @ethanagon (Ethan). I don't know which tap it came from, I did this a while ago and just now realized it's way out of date.

…

On Mon, Oct 28, 2024 at 3:31 PM Steven Weaver ***@***.***> wrote: Dear @spond <https://github.com/spond>, Yes, but @ethanagon <https://github.com/ethanagon> found version 2.5.2, which I couldn't immediately find on Github. Best, Steven — Reply to this email directly, view it on GitHub <#1753 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AHU652H2BC63IT5ADITECHTZ52GK7AVCNFSM6AAAAABQYEHT2WVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDINBSGQ2TEMBQGA> . You are receiving this because you were mentioned.Message ID: ***@***.***>

Answer 5 · 2024-10-28T20:53:34.000Z

OK, PR is here -- brewsci/homebrew-bio#1945

Answer 6 · 2024-11-01T21:03:17.000Z

PR was merged. Please follow the instructions on the homebrew-bio page -- brewsci/homebrew-bio#1947