ventolab/CellphoneDB
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
Jupyter NotebookMIT
Issues
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Problems with microenvironment file
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Problems with microenvironment file
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Whether single cell data of different cell components are suitable for analysis after integration
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Enhanced CellPhoneDB Visualization in Python
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Gene name duplications
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Cellphonedb for proteomics analysis
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negative values of lr-means column
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About integrin genes from the output
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Directionality of interactions
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KeyError: 'significant_means'
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KeyError: 'LAMA3_integrin_a3b1_complex' when running cpdb_statistical_analysis_method.call
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Exception: Some clusters/cell_types in microenvironments file are not present in metadata
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Equality comparisons are not supported for AnnData objects, instead compare the desired attributes.
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Unexpected error in cellphonedb: AttributeError: Can only use .str accessor with string values!
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Can Minimum p-value less than 1e-3
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KeyError: 'significant_means'
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KeyError: 'FN1_integrin_a5b1_complex'
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Surface proteins
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EmptyDataError on Test Data
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How to download database?
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All counts filtered
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KeyError
#170 opened