ventolab/CellphoneDB

Issues

• CellSign results have lost interaction orientation

  #169 opened 5 months ago by rchapple2
  1

• Invalid Counts data

  #165 opened 5 months ago by ncedi12
  2

• ValueError: a.shape[axis] doesn't match length of group_idx.

  #168 opened 5 months ago by deevdevil88
  1

• raise RuntimeError in spawn.py

  #167 opened 6 months ago by mmuuyyii
  1

• AllCountsFilteredException: All counts filtered for db v5 and https://github.com/ventolab/CellphoneDB/tree/master/example_data

  #166 opened 6 months ago by Inbarpl
  2

• Missing CellSign_active_interactions and CellSign_active_interactions_deconvoluted files when running Method2

  #156 opened 7 months ago by wfaalajr
  2

• KeyError: 'VEGFA_FLT1_complex'

  #153 opened 6 months ago by PattF
  9

• Warning: ‘>’ not meaningful for factorsError in if (any(lr_interactions[, 3] > 0)) { : missing value where TRUE/FALSE needed

  #162 opened 6 months ago by zehualilab
  1

• ValueError: too many values to unpack (expected 4)

  #163 opened 6 months ago by Gitman0810
  1

• compare the results of DEG analysis with results of v4.0.0

  #161 opened 6 months ago by MugenQin
  3

• ParseCountsException: Invalid Counts data

  #160 opened 7 months ago by scuhkf
  7

• ParseCountsException: Invalid Counts data

  #159 opened 7 months ago by scuhkf
  0

• Update version in __init__

  #158 opened 7 months ago by akurlovs
  1

• T1_Method2 tutorial doesn't seem to match the actual file

  #149 opened 7 months ago by dd315
  3

• cellphonedb install problem

  #147 opened 7 months ago by wrfokokokwrf
  1

• Typo in readme.md

  #141 opened 7 months ago by pvalle6
  1

• db_utils.download_database produces incompatible files for v3.0.0 and v4.0.0

  #136 opened 7 months ago by sisterdot
  1

• Missing interactions post-method2 analysis

  #135 opened 7 months ago by jl1693
  1

• Example running the DEG-based method with microenviroments file

  #134 opened 7 months ago by cancerGen
  1

• Error in building DB for v3.0.0

  #133 opened 7 months ago by avsarg
  4

• error in result saving

  #132 opened 7 months ago by harshagr21
  1

• cellphonedb does not work

  #130 opened 7 months ago by Teich2233
  4

• error trying to download database

  #129 opened 7 months ago by kbrulois
  1

• Invalid Counts data

  #126 opened 7 months ago by zhuyewen
  2

• The rabbitmq callback invoke cellphonedb error for the thread

  #125 opened 7 months ago by honghh2018
  1

• Question about method 2 mean calculation for interactions containing complex partner

  #123 opened 7 months ago by stanaka6
  1

• Pvalue adjusting

  #121 opened 7 months ago by maximelepetit
  1

• questions about cellphonedb database protien_input file

  #120 opened 7 months ago by YinCY123
  2

• relevant_interactions_result don't have all celltype combinations.

  #119 opened 7 months ago by wangjiawen2013
  1

• EmptyDataError: No columns to parse from file

  #118 opened 7 months ago by yanqiqian
  1

• "Some cells in meta did not exist in counts" error

  #157 opened 7 months ago by ndrubins
  2

• Converting Seurat object into counts input file

  #146 opened 8 months ago by nea-k
  2

• Exact p-value output file?

  #155 opened 7 months ago by ccl6
  1

• Where is the iterations number file ?

  #154 opened 7 months ago by Portulaca666
  2

• multiple samples interaction comparision

  #122 opened a year ago by hua1991
  3

• Unable to run cellphonedb due to database

  #152 opened 8 months ago by molybdenumt
  7

• Relevance score in CPDB

  #151 opened 8 months ago by Pedramto89
  2

• Cell expression thresholds

  #150 opened 8 months ago by jamesl-g
  1

• UFuncTypeError: when running cpdb analysis

  #148 opened 8 months ago by kpeeles01
  3

• Using h5ad file and error "Some cells in meta did not exist in counts,Maybe incorrect file format": Invalid Counts data

  #144 opened 8 months ago by saum-kmr
  8

• ValueError: negative indices not supported

  #143 opened 8 months ago by GGboy-Zzz
  3

• Clarification Needed on --threshold Argument

  #145 opened 8 months ago by macelik
  2

• Issue with installation

  #142 opened 9 months ago by hemantgujar
  2

• Running statistical_analysis_method gets stuck at Running Real Analysis

  #140 opened 10 months ago by anemartinezlarrinaga2898
  23

• numpy.core._exceptions._UFuncNoLoopError: ufunc 'add' did not contain a loop with signature matching types (dtype('int64'), dtype('<U1')) -> None

  #138 opened a year ago by cirsina
  5

• Download error

  #139 opened 10 months ago by Ithinky
  2

• Error in generating costomize interaction database

  #137 opened a year ago by hfl112
  3

• error in analysis

  #131 opened a year ago by harshagr21
  2

• OSError on windows

  #127 opened a year ago by rocketeer1998
  4

• About the pvalue.txt result

  #124 opened a year ago by SZ-qing
  2