Pinned Repositories
BestPracticesWorkshop
Repository for the workshop "Best practices on development"
ERNE
Extended Randomized Numerical Aligner
flowcell_parser
Collection of python scripts to parse Illumina Xten output
FRC_align
Computes FRC from SAM/BAM file and not from afg files
genomics-status
Tornado server for tracking samples at NGI Stockholm
hugin
Status monitor
joint_variant_calling
NouGAT
qaTools
Some more QA
TIDDIT
FindTranslocations
vezzi's Repositories
vezzi/FRC_align
Computes FRC from SAM/BAM file and not from afg files
vezzi/NouGAT
vezzi/TIDDIT
FindTranslocations
vezzi/ERNE
Extended Randomized Numerical Aligner
vezzi/joint_variant_calling
vezzi/qaTools
Some more QA
vezzi/BestPracticesWorkshop
Repository for the workshop "Best practices on development"
vezzi/flowcell_parser
Collection of python scripts to parse Illumina Xten output
vezzi/genomics-status
Tornado server for tracking samples at NGI Stockholm
vezzi/hugin
Status monitor
vezzi/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
vezzi/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
vezzi/ngi_pipeline
Code driving the production pipeline at SciLifeLab (not yet in production)
vezzi/post_join_calling
Tentative repo in order to collect NextFLow tools to perform QC on the result of join calling
vezzi/scilifelab
Misc code snippets for Science For Life Laboratory
vezzi/standalone_scripts
Repository to store standalone scripts that do not belong to any bigger package or repository
vezzi/TACA
Tool for the Automation of Cleanup and Analyses
vezzi/taca-ngi-pipeline
A TACA plugin adding functionality relevant for the ngi_pipeline
vezzi/technical-training
Material for technical training workshops hosted by SSC
vezzi/wgs-structvar
Whole Genome Sequenceing Structural Variation Pipelines