Neuronize v2 is an application focused in interoperability between different ways to represent the neuron morphology, mesh or tracing. Specifically the tool can obtain a tracing file readable by Neurolucida from a VRML file generated by Imaris filament tracing plugin from Imaris.
In addition the tool can generate a neuronal mesh from a tracing file, including spines, and generate a plausible soma from the data included in the input tracing file or from a soma mesh generated by Imaris.
- SkelGenerator (1)
- Qt5
- Boost
- Eigen3
- QGLViewer-2.6.3
- OpenMesh-7.0
- VCG (development version)
- freeglut-2.8.1
(1) Automatically download and build
Neuronize has been successfully built and used on Ubuntu 16.04 LTS, Mac OSX High Sierra and Windows 10 64-bits with Visual Studio 2015. Please ensure that you build the Release version in order to get the best performance possible.
git clone https://github.com/vg-lab/Neuronize
mkdir Neuronize/build && cd Neuronize/build
git submodule update --init
cmake .. -DCLONE_SUBPROJECTS=ON
make