VIB-SingleCell-NF
Pipelines for single-cell data in Nextflow DSL2. Developed and maintained by the Stein Aerts lab, Yvan Saeys lab, and Janssen Pharmaceutica.
Pinned Repositories
picard
A repository for the picard module of the vib-singlecell-nf pipeline
popscle
A repository for the popscle module of the vib-singlecell-nf pipeline
scanpy
A repository for the scanpy module of the vib-singlecell-nf pipeline
scrublet
A repository for the scrublet module of the vib-singlecell-nf pipeline
sratoolkit
A repository for the sratoolkit module of the vib-singlecell-nf pipeline
star
A repository for the star module of the vib-singlecell-nf pipeline
template
A template repository for adding new tools to VIB-SingleCell-NF
trimgalore
A repository for the Trim Galore module of the vib-singlecell-nf pipeline
vsn-pipelines
A repository of pipelines for single-cell data in Nextflow DSL2
vsn-pipelines-examples
Configs and results for example data
VIB-SingleCell-NF's Repositories
vib-singlecell-nf/vsn-pipelines
A repository of pipelines for single-cell data in Nextflow DSL2
vib-singlecell-nf/vsn-pipelines-examples
Configs and results for example data
vib-singlecell-nf/scanpy
A repository for the scanpy module of the vib-singlecell-nf pipeline
vib-singlecell-nf/popscle
A repository for the popscle module of the vib-singlecell-nf pipeline
vib-singlecell-nf/scrublet
A repository for the scrublet module of the vib-singlecell-nf pipeline
vib-singlecell-nf/template
A template repository for adding new tools to VIB-SingleCell-NF
vib-singlecell-nf/picard
A repository for the picard module of the vib-singlecell-nf pipeline
vib-singlecell-nf/sratoolkit
A repository for the sratoolkit module of the vib-singlecell-nf pipeline
vib-singlecell-nf/star
A repository for the star module of the vib-singlecell-nf pipeline
vib-singlecell-nf/trimgalore
A repository for the Trim Galore module of the vib-singlecell-nf pipeline
vib-singlecell-nf/archr
A repository for the ArchR module of the vib-singlecell-nf pipeline
vib-singlecell-nf/bap
A repository for the BAP module of the vib-singlecell-nf pipeline
vib-singlecell-nf/bwamaptools
A repository for the bwa mapping module of the vib-singlecell-nf pipeline
vib-singlecell-nf/celda
A repository for the celda module of the vib-singlecell-nf pipeline
vib-singlecell-nf/cellranger
A repository for the cellranger module of the vib-singlecell-nf pipeline
vib-singlecell-nf/cellranger-atac
A repository for the cellranger-atac module of the vib-singlecell-nf pipeline
vib-singlecell-nf/directs
vib-singlecell-nf/dropletutils
A repository for the dropletutils module of the vib-singlecell-nf pipeline
vib-singlecell-nf/dropseqtools
A repository for the dropseqtools module of the vib-singlecell-nf pipeline
vib-singlecell-nf/edirect
A repository for the edirect module of the vib-singlecell-nf pipeline
vib-singlecell-nf/fastp
A repository for the fastp module of the vib-singlecell-nf pipeline
vib-singlecell-nf/flybaser
vib-singlecell-nf/harmony
A repository for the harmony module of the vib-singlecell-nf pipeline
vib-singlecell-nf/pcacv
A repository for the pcacv module of the vib-singlecell-nf pipeline
vib-singlecell-nf/pycistopic
A repository for the pycisTopic module of the vib-singlecell-nf pipeline
vib-singlecell-nf/scenic
A repository for the scenic module of the vib-singlecell-nf pipeline
vib-singlecell-nf/singlecelltoolkit
A repository for the single_cell_toolkit module of the vib-singlecell-nf pipeline
vib-singlecell-nf/sinto
A repository for the Sinto module of the vib-singlecell-nf pipeline
vib-singlecell-nf/snaptools
A repository for the SnapTools module of the vib-singlecell-nf pipeline
vib-singlecell-nf/soupx
A repository for the soupx module of the vib-singlecell-nf pipeline