Pinned Repositories
MobiCNV
CNV analysis based on the depth of coverage of Illumina data
MobiDL
MobidicWDL workflows
autofastq
script to automate Illumina bcl2fastq utility
autonenufaar
Automate nenufaar
BamCramConvert
script to convert bam2cram and reverse using find and samtools
ComputeDeltaESRSeq
A simple Perl script to compute DeltaESRSeq to predict exon skipping induced by exonic variants
manifest2intervals
script to convert Illumina manifests (or BED) into intervals files.
MobiDetails
WebApp for DNA variants interpretation
u2
USHVaM2: integrated genetics database system for deafness and blindness team in the Laboratory of Molecular Genetics, Montpellier University Hospital
vidboda's Repositories
vidboda/MobiDetails
WebApp for DNA variants interpretation
vidboda/autofastq
script to automate Illumina bcl2fastq utility
vidboda/BamCramConvert
script to convert bam2cram and reverse using find and samtools
vidboda/autonenufaar
Automate nenufaar
vidboda/ComputeDeltaESRSeq
A simple Perl script to compute DeltaESRSeq to predict exon skipping induced by exonic variants
vidboda/manifest2intervals
script to convert Illumina manifests (or BED) into intervals files.
vidboda/MDUtils
Utilities for MobiDetails
vidboda/nenufaar
DNA NGS pipeline
vidboda/nenufaarity
singularity recipe for nenufaar container
vidboda/ngs_designer
perl script to generate BED files for NGS experiments from an gene list
vidboda/u2
USHVaM2: integrated genetics database system for deafness and blindness team in the Laboratory of Molecular Genetics, Montpellier University Hospital
vidboda/wdlDev
repos to test WDL
vidboda/bam2cram-check
vidboda/getGeneInfo
Perl script to retrieve various info form a list of HGNC genes, including exon coordinates or domain details. In particular generates a BED that can be use to design NGS experiences.
vidboda/getPanelAppStatus
get some info on the panelapp status of a gene list and panel ID form panelApp API
vidboda/led
vidboda/led_utilities
vidboda/ponp_eval
Script to automatise Pathogenic-Or-Not Predictors assessment
vidboda/snakemakeDev
just to test snakemake