viktormiok
Senior Scientist - Computational Biology
German Center for Diabetes Research & Institute of Diabetes and Obesity @ Helmholtz MunichMunich, Germany
Pinned Repositories
AstrocytesHeterogenityARC
Analysis of proteomics, bulk and single cell RNA-seq data to investigate reorganisation of astrocytic molecular identity
BioFig
R package for visualization of omics data
CoNI
Correlation Guided Network Integration
Csppa
Machine learning analysis & visualisation of cellular spatial point patterns
CsppaRshiny
The R Shiny App for machine learning analysis and visualization of cellular spatial point patterns under hypercaloric diet shifts.
PhD-thesis
Latex scripts to compile my PhD thesis
ragt2ridges
Ridge Estimation of Vector Auto-Regressive (VAR) Processes
scRNAseq_AdipocyteSubtyping
Python pipelines for analysis of adipocyte scRNA-seq data
TempOseq_CarcinoChemMCF-7
Cellular signatures characterisation after carcinogenic chemical exposure in mammalian tissue.
tigaR
Temporal Integrative Genomics Analysis in R
viktormiok's Repositories
viktormiok/PhD-thesis
Latex scripts to compile my PhD thesis
viktormiok/scRNAseq_AdipocyteSubtyping
Python pipelines for analysis of adipocyte scRNA-seq data
viktormiok/AstrocytesHeterogenityARC
Analysis of proteomics, bulk and single cell RNA-seq data to investigate reorganisation of astrocytic molecular identity
viktormiok/BioFig
R package for visualization of omics data
viktormiok/Csppa
Machine learning analysis & visualisation of cellular spatial point patterns
viktormiok/ragt2ridges
Ridge Estimation of Vector Auto-Regressive (VAR) Processes
viktormiok/TempOseq_CarcinoChemMCF-7
Cellular signatures characterisation after carcinogenic chemical exposure in mammalian tissue.
viktormiok/tigaR
Temporal Integrative Genomics Analysis in R
viktormiok/CoNI
Correlation Guided Network Integration
viktormiok/CsppaRshiny
The R Shiny App for machine learning analysis and visualization of cellular spatial point patterns under hypercaloric diet shifts.
viktormiok/DNAmethyl-miRNA_OSCC
Gene regulatory networks characterization of methylation profiles from OSCC and their interplay with microRNAs.
viktormiok/PhD-thesisSM
PhD thesis supplementary materials
viktormiok/scRNAseq_Adipocyte_ImmuneCells
In depth characterisation of Immune cells in different adipocyte cells from young and old mice using scRNAseq data
viktormiok/snRNAseq_RiboTagRNAseq-oxytocin
Coupling of oxytocin and cholecystokinin pathways in the hypothalamus is required for gut-to-brain homeostatic feeding control
viktormiok/tigaRcycle
An R package for utilities to guide in-depth detection of circadian signals from omics time series data
viktormiok/AgRP-neurons_profiling
RNA-seq profiling of the AgRP-Cre mice under standard chow, high fat high sugar and DREADD diet.
viktormiok/ASE_MBASED
Executable R script for ASE with MBASED
viktormiok/GGSEA
Generalized Gene Set Enrichment Analysis
viktormiok/metformin-Rat_diet-gender
metformin-Rat_diet-gender
viktormiok/Python_ML_DataAnalysis
Machine learning methods to process data for features, train the models, assess the performance, and tune parameters for better performance.
viktormiok/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
viktormiok/viktormiok.github.io
viktormiok/viktormiok.wordpress.com
Building a website.
viktormiok/featureSelection4multiOmicsIntegration
Feature selection for multi-omics data integration
viktormiok/multiOmics4fastingTherapies
Multi OMICS analysis for comparisons of fasting therapies