Including a call to datasummary_correlation as an argument to datasummary fails with an uninformative error message
mronkko opened this issue · 1 comments
mronkko commented
Including a call to datasummary_correlation as an argument to datasummary fails with an uninformative error message. The error message that I get is:
Error in factory_fun(tab, align = align, hrule = hrule, notes = notes, :
could not find function "factory_fun"
This occurs with the GitHub version of modelsummary. I checked the code, and I could not figure out what the problem was. I am attaching a minimal reproducible example and session info.
library(car) # Prestige data
library(modelsummary)
library(tidyverse)
# This causes an error
select(Prestige, income, education, women, prestige) %>%
# The . in the arguments refer to the dataset passed forward by the pipe
# %>% operator.
datasummary(All(.) ~ Mean + SD, .,
add_columns = datasummary_correlation(., output = "data.frame")[,-1])
# Same without pipe, causes error
data <- select(Prestige, income, education, women, prestige)
datasummary(All(data) ~ Mean + SD, data,
add_columns = datasummary_correlation(data, output = "data.frame")[,-1])
# This works
correlations <- datasummary_correlation(data, output = "data.frame")[,-1]
datasummary(All(data) ~ Mean + SD, data,
add_columns = correlations)
Sesssioninfo
> sessionInfo()
R version 4.4.1 Patched (2024-07-08 r86915)
Platform: aarch64-apple-darwin20
Running under: macOS Sonoma 14.6.1
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.12.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
time zone: America/Chicago
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] lubridate_1.9.3 forcats_1.0.0 stringr_1.5.1 dplyr_1.1.4 purrr_1.0.2 readr_2.1.5
[7] tidyr_1.3.1 tibble_3.2.1 ggplot2_3.5.1 tidyverse_2.0.0 car_3.1-2 carData_3.0-5
[13] modelsummary_2.1.1.5
loaded via a namespace (and not attached):
[1] utf8_1.2.4 generics_0.1.3 stringi_1.8.4 hms_1.1.3 digest_0.6.36 magrittr_2.0.3 grid_4.4.1
[8] timechange_0.3.0 fastmap_1.2.0 jsonlite_1.8.8 backports_1.5.0 fansi_1.0.6 scales_1.3.0 abind_1.4-5
[15] cli_3.6.3 rlang_1.1.4 munsell_0.5.1 base64enc_0.1-3 withr_3.0.0 repr_1.1.7 tinytable_0.3.0
[22] tools_4.4.1 tzdb_0.4.0 checkmate_2.3.2 colorspace_2.1-1 IRdisplay_1.1 vctrs_0.6.5 R6_2.5.1
[29] lifecycle_1.0.4 insight_0.20.2 pkgconfig_2.0.3 pillar_1.9.0 gtable_0.3.5 data.table_1.15.4 glue_1.7.0
[36] xfun_0.45 tidyselect_1.2.1 rstudioapi_0.16.0 knitr_1.48 htmltools_0.5.8.1 tables_0.9.28 compiler_4.4.1
``
vincentarelbundock commented
Thanks for the report. Should be fixed after installing the latest development versions of both tinytable
and modelsummary
.
Then, restart your R
session completely.
Let me know if it's still broken.
Thanks for the report!