Matlab code for the TV-based Image Processing Framework for Blind Color Deconvolution and Classification of Histological Images. See example.m for an use case over a single H&E image
Full reference:
F. Pérez-Bueno, M. López-Pérez, M. Vega, J. Mateos, V. Naranjo, R. Molina, and A.K. Katsaggelos
A TV-based Image Processing Framework for Blind Color Deconvolution and Classification of Histological Images.
Digital Signal Processing, 2020
DOI: https://doi.org/10.1016/j.dsp.2020.102727
In digital histopathological image analysis, two conflicting objectives are often pursued: closeness to the original tissue and high classification performance. The former objective tries to recover images (stains) that are as close as possible to the ones obtained by staining the tissue with a single dye. The latter objective requires images that allow the extraction of better features for an improved classification, even if their appearance is not close to single stained tissues. In this paper we propose a framework that achieves both objectives depending on the number of stains used to mathematically decompose the scanned image. The proposed framework uses a total variation prior for each stain together with the similarity to a given reference color-vector matrix. Variational inference and an evidence lower bound are utilized to automatically estimate all the latent variables and model parameters. The proposed methodology is tested on real images and compared to classical and state-of-the-art methods for histopathological blind image color deconvolution and prostate cancer classification.
@article{perezbueno2020TV,
title={A TV-based image processing framework for blind color deconvolution and classification of histological images},
author={Fernando P{\'e}rez-Bueno and Miguel L{\'o}pez-P{\'e}rez and Miguel Vega and Javier Mateos and Valery Naranjo and Rafael Molina and Aggelos K. Katsaggelos},
journal={Digital Signal Processing},
volume={101},
pages={102727},
year={2020},
publisher={Elsevier}
}
If you are interested in blind color deconvolution you might be interested in our works:
- Fully Automatic Blind Color Deconvolution of Histological Images Using Super Gaussians. 2020 28th European Signal Processing Conference (EUSIPCO).
- "Variational Bayesian Blind Color Deconvolution of Histopathological Images," in IEEE Transactions on Image Processing, vol. 29, pp. 2026-2036, 2020