Pinned Repositories
compose
dev
Developer tooling for Virtool.
pyfixtures
Pytest style fixtures outside of Pytest
ref-builder
Build and maintain reference sets of pathogen genome sequences.
virtool
Viral infection diagnostics using next-generation sequencing
virtool-core
Core utilities for Virtool and associated packages
virtool-ui
The browser frontend for Virtool
virtool-website
The Virtool product website
virtool-workflow
A framework for building Virtool workflows
workflow-pathoscope
A workflow for detecting known viruses in Virtool
Virtool's Repositories
virtool/virtool
Viral infection diagnostics using next-generation sequencing
virtool/virtool-ui
The browser frontend for Virtool
virtool/virtool-website
The Virtool product website
virtool/virtool-core
Core utilities for Virtool and associated packages
virtool/virtool-workflow
A framework for building Virtool workflows
virtool/workflow-pathoscope
A workflow for detecting known viruses in Virtool
virtool/compose
virtool/dev
Developer tooling for Virtool.
virtool/pyfixtures
Pytest style fixtures outside of Pytest
virtool/ref-builder
Build and maintain reference sets of pathogen genome sequences.
virtool/virtool.ca
The new website for Virtool
virtool/workflow-nuvs
A workflow for identifying novel viruses in Virtool
virtool/external-tools
virtool/hmm-viruses
HMM data for predicting novel viruses
virtool/ml-plant-viruses
A machine learning model for detecting plant viruses.
virtool/ref-plant-viruses
An official Virtool reference for plant viruses
virtool/virtool-cli
A command line interface for working with Virtool data
virtool/virtool-maintenance
virtool/virtool-migration
Alembic migrations for Virtool
virtool/virtool-operator
A Helm chart and Kubernetes operator for keeping Virtool updated without downtime.
virtool/workflow-build-index
A workflow for building Virtool reference indexes
virtool/workflow-create-sample
A workflow for creating Virtool samples
virtool/workflow-create-subtraction
A workflow for creating Virtool subtractions
virtool/workflow-iimi
A workflow for detecting known viruses using ML in Virtool
virtool/workflow-tools
A Docker image with bioinformatics tools used by virtool-workflow
virtool/virtool-contrib-guide
virtool/.github
virtool/tools
virtool/uploader
virtool/workflow-aodp
A workflow for using amplicon analysis in Virtool using AODP