viswam78

Deep-analyses-of-In-silico-fluxes

dockerizeOMSSA

Docker 'ize OMSSA searches (incl. makeblastdb)

Ecoli_FBA_input_prediction

Code and data for Sridhara et al., Predicting growth conditions from internal metabolic fluxes in an in-silico model of E. coli, PLOS ONE 9:e114608 (2014).

Ecoli_PTMs

Code and data for Brown et al., Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions

LASSOprobes

markdown2CV

Motivation to use previous open source github repos with slight tweaks

Molecular-Dynamics-Simulations-of-Lipid-Bilayers-with-ROS

MD simulations of reactive oxygen/nitrogen species effects on plasma membrane

pepsyn

Peptide library design

PhIP-Seq-Analyzer

searchOMSSA

viswam78/searchOMSSA

viswam78/Deep-analyses-of-In-silico-fluxes

viswam78/dockerizeOMSSA

Docker 'ize OMSSA searches (incl. makeblastdb)

viswam78/Ecoli_FBA_input_prediction

Code and data for Sridhara et al., Predicting growth conditions from internal metabolic fluxes in an in-silico model of E. coli, PLOS ONE 9:e114608 (2014).

viswam78/Ecoli_PTMs

Code and data for Brown et al., Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions

viswam78/LASSOprobes

viswam78/markdown2CV

Motivation to use previous open source github repos with slight tweaks

viswam78/Molecular-Dynamics-Simulations-of-Lipid-Bilayers-with-ROS

MD simulations of reactive oxygen/nitrogen species effects on plasma membrane

viswam78/pepsyn

Peptide library design

viswam78/PhIP-Seq-Analyzer

viswam78/phip-stat

Analysis tools for PhIP-seq experiments

viswam78/Sivome.github.io

Genome + Proteome + Metabolome + Lipidome + Phenome + Fluxome + *ome = Sivome