Usage:
nextflow run viv3kanand/STR-WARS --fastq 'fastq_pass' --fast5 'fast5_pass' --reference 'reference/ref.fa' --config 'reference/repeat_config.tsv'
Mandatory arguments:
--fastq fastq directory (default ./fastq_pass)
--fast5 fast5 directory (default ./fast5_pass)
--reference reference fasta (default ./reference/ref.fa)
--config repeat config file (default ./reference/repeat_config.tsv)
Optional arguments:
--outdir Output directory (default ./results)
--max_cpus Maximum number of CPUs that can be requested for any single job (default --max_cpus 10)
--max_memory Maximum amount of memory that can be requested for any single job (default --max_memory '8.GB')
--help Help message