Pinned Repositories
EMT-Cancer-scRnaSeq
geneex
GeneEx
destiny
R package for single cell and other data analysis using diffusion maps
mousegwas
An R package for easy execution of mouse GWAS
networkx
Official NetworkX source code repository.
nextflow-starter-cloud
nonlinearTseries
Nonlinear time series analysis in R
sRACIPE
sRACIPE for bioconductor
vivekkohar's Repositories
vivekkohar/destiny
R package for single cell and other data analysis using diffusion maps
vivekkohar/mousegwas
An R package for easy execution of mouse GWAS
vivekkohar/networkx
Official NetworkX source code repository.
vivekkohar/nextflow-starter-cloud
vivekkohar/nonlinearTseries
Nonlinear time series analysis in R
vivekkohar/sRACIPE
sRACIPE for bioconductor
vivekkohar/odeint-v2
odeint - solving ordinary differential equations in c++ v2
vivekkohar/PanglaoDB
metadata and data from the database
vivekkohar/PHATE
PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
vivekkohar/PoincareMaps
The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRNAseq data. However, existing techniques are based on Euclidean geometry which is not an optimal choice for modeling complex cell trajectories with multiple branches. To overcome this fundamental representation issue we propose Poincaré maps, a method harnessing the power of hyperbolic geometry into the realm of single-cell data analysis.
vivekkohar/pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
vivekkohar/seurat
R toolkit for single cell genomics
vivekkohar/SJARACNe
Scalable Tool for Gene Network Reverse Engineering
vivekkohar/test
vivekkohar/tinytest
A lightweight, no-dependency, but full-featured package for unit testing in R
vivekkohar/visNetwork
R package, using vis.js library for network visualization
vivekkohar/vivekkohar.github.io
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