/proteine_migration_profiles

Generates Proteine Migration Profiles as Plot, CSV and PDF

Primary LanguagePython

Migration Profiles

This python script generates migration profiles based on protein abundance distribution.

It will generate:

  • Figures as png example.png

  • CSV Data with the abundance information

protein,max_index_a,max_index_b,difference,filename
LINC00493,22,11,11,./figures/LINC00493.png
PIGBOS1,0,0,0,./figures/PIGBOS1.png
  • All images into a pdf report

Prerequisite

  • Python3
  • Pip3

Installation

  1. Clone this repository by using git clone <repository url> in the terminal
  2. Change into the directory by executing cd <repo_dir>
  3. Install the dependencies by executing pip install -r requirements.txt

Usage

Please delete files in the /figures and /output folder if you have used this script earlier.

  1. Replace the protein data in the data folder
    1. data/dataset_a.csv
    2. data/dataset_b.csv
  2. In the terminal execute python main.py
  3. The results are written into
    1. output/result.csv
    2. output/report.pdf
    3. figures/