Migration Profiles
This python script generates migration profiles based on protein abundance distribution.
It will generate:
protein,max_index_a,max_index_b,difference,filename
LINC00493,22,11,11,./figures/LINC00493.png
PIGBOS1,0,0,0,./figures/PIGBOS1.png
- All images into a pdf report
Prerequisite
- Python3
- Pip3
Installation
- Clone this repository by using
git clone <repository url>
in the terminal - Change into the directory by executing
cd <repo_dir>
- Install the dependencies by executing
pip install -r requirements.txt
Usage
Please delete files in the /figures
and /output
folder if you have used this script earlier.
- Replace the protein data in the data folder
data/dataset_a.csv
data/dataset_b.csv
- In the terminal execute
python main.py
- The results are written into
output/result.csv
output/report.pdf
figures/