/GeneSeqer

Sensitive spliced-alignment of cDNAs or proteins

Primary LanguageCGNU General Public License v3.0GPL-3.0

GeneSeqer

Sensitive spliced-alignment of cDNA and protein sequences onto genomic DNA.

Usuka, J., Zhu, W. & Brendel, V. (2000) Optimal spliced alignment of homologous cDNA to a genomic DNA template. Bioinformatics 16, 203-211.

Usuka, J. & Brendel, V. (2000) Gene structure prediction by spliced alignment of genomic DNA with protein sequences: Increased accuracy by differential splice site scoring. J. Mol. Biol. 297, 1075-1085.

Brendel, V., Xing, L. & Zhu, W. (2004) Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus. Bioinformatics 20, 1157-1169.