The Dockerfile here will build the experiment from the repository, along with a simple test task. This image is also an automated build on Docker Hub if you don't want to build locally (it takes a bit of time!).
git clone https://www.github.com/vsoch/rstudio-neuro
cd rstudio-neuro
docker build -t vanessa/rstudio-neuro .
Don't forget the . at the end! It means the present working directory. And the image knows WHAT'S UP.
...
Removing intermediate container 8d4fef74f7ea
Step 36/36 : RUN cat /hello.txt
---> Running in d33b4e507d04
____ _ _ _ _ _ _____ _______ ___
| _ \ ___ | | __| |_ __ __ _ ___| | _| | __ _| |__ | ___|_ _\ \ / / |
| |_) / _ \| |/ _` | '__/ _` |/ __| |/ / |/ _` | '_ \ | |_ | | \ \ /\ / /| |
| __/ (_) | | (_| | | | (_| | (__| <| | (_| | |_) | | _| | | \ V V / |_|
|_| \___/|_|\__,_|_| \__,_|\___|_|\_\_|\__,_|_.__( ) |_| |_| \_/\_/ (_)
|/
---> 3a874bc1da02
Removing intermediate container d33b4e507d04
Successfully built 3a874bc1da02
Successfully tagged vanessa/rstudio-neuro:latest
The image vanessa/rstudio-neuro can be run as follows. In the example, we want to mount the directory where data has been downloaded (/data) to a directory on our host, and we want to expose port 8787 where rstudio server is running.
# Without mounting the data folder
docker run -p 8787:8787 vanessa/rstudio-neuro
# Mounting the data folder
docker run -v $PWD:/data -p 8787:8787 vanessa/rstudio-neuro
# Run in detached mode
docker run -d -v $PWD:/data -p 8787:8787 vanessa/rstudio-neuro
Then visit http://localhost:8787 in your browser. You need to login with:
- username: rstudio
- password: rstudio
The data downloaded should be present in your files, and in the image it's located under /home/rstudio