vvcb
Surgeon (NHS), Head of Data Science and AI, @LTHTR-DST. Chief Clinical Information Officer @lsc-sde Honorary Professor, Lancaster University
@lsc-sde United Kingdom
Pinned Repositories
omcp
Model Context Protocol Server for the Observational Medical Outcomes Partnership (OMOP) Common Data Model
k8tre
SATRE-Compliant TRE implementation on Kubernetes
lsc-sde
LSC SDE Kubernetes Research Analytics Platform
stroma
Scalable Transpiling Reproducible OMOP Medallion Architecture
AzureTRE
An accelerator to help organizations build Trusted Research Environments on Azure.
AzureTRE-Deployment
comorbidipy
Python package to calculate comorbidity scores including Charlson Comorbidity Score and Elixhauser Score and their weighted variants.
MD
MD Thesis: Cardiopulmonary exercise testing in pancreatic surgery.
PatManPlus
Next-Gen Patient Lists for Junior Doctors - This will change the life of every junior doctor in the NHS and beyond!
Python
All Algorithms implemented in Python
vvcb's Repositories
vvcb/comorbidipy
Python package to calculate comorbidity scores including Charlson Comorbidity Score and Elixhauser Score and their weighted variants.
vvcb/AzureTRE
An accelerator to help organizations build Trusted Research Environments on Azure.
vvcb/AzureTRE-Deployment
vvcb/Python
All Algorithms implemented in Python
vvcb/2wr
A simple ReactJS + Formik application to allow structured data capture in the colorectal 2 week wait clinic for patients with suspected cancer.
vvcb/dbt-synthea
[Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM
vvcb/diagrams
:art: Diagram as Code for prototyping cloud system architectures
vvcb/doccano
Open source annotation tool for machine learning practitioners.
vvcb/gpu-jupyter
Leverage the flexibility of Jupyterlab through the power of your NVIDIA GPU to run your code from Tensorflow and Pytorch in collaborative notebooks on the GPU.
vvcb/guacamole-client
Mirror of Apache Guacamole Client
vvcb/jupyter-guacamole
⚠️⚠️⚠️⚠️⚠️ Under development, insecure, do not use! ⚠️⚠️⚠️⚠️⚠️
vvcb/keycloak-client
Python client for Keycloak
vvcb/kubeai
AI Inference Operator for Kubernetes. The easiest way to serve ML models in production. Supports VLMs, LLMs, embeddings, and speech-to-text.
vvcb/MedCAT
Medical Concept Annotation Tool
vvcb/negspacy
spaCy pipeline object for negating concepts in text
vvcb/ohdsi_cancer_edinburgh_lancs
OHDSI Collaboration looking at cancer outcomes between Edinburgh University and Lancashire Teaching Hospitals
vvcb/OMOP_Alchemy
SQLAlchemy models for OHDSI OMOP Common Data Model
vvcb/paesoe-test
vvcb/PaperScraper
A web scraping tool to systematically extract the text of scientific papers and corresponding metadata from university accessible journals.
vvcb/pdfsizeopt
PDF file size optimizer
vvcb/picmed
vvcb/pytgithub-test
vvcb/solrq
Python Solr query utility // http://solrq.readthedocs.org/en/latest/
vvcb/sqlmesh
Scalable and efficient data transformation framework - backwards compatible with dbt.
vvcb/sqlmesh_synthea
SQLMesh to generate on OMOP 5.4 CDM using Synthea synthetic data
vvcb/test
vvcb/UK-OMOP
A directory of OMOP data sets in the UK
vvcb/vscode-binder
VS Code on Binder
vvcb/WhiteRabbit
WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.
vvcb/www