vxh357
PhD Student @ University of Copenhagen | Computational biology | Structural bioinformatics | Machine learning
University of Copenhagen
Pinned Repositories
alphamissense
Andrew-NG-Notes
This is Andrew NG Coursera Handwritten Notes.
awesome-python-data-science
A curated list of Python libraries used for data science.
bash_search
Blazingly fast and interactive file search scripts, based on FZF and BASH.
Best-README-Template
An awesome README template to jumpstart your projects!
clinvar-miner
Website to analyze conflicting assertions in ClinVar
ColabDesign
Making Protein Design accessible to all via Google Colab!
ColabFold
Making Protein folding accessible to all!
cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
coursera-deep-learning-specialization
Notes, programming assignments and quizzes from all courses within the Coursera Deep Learning specialization offered by deeplearning.ai: (i) Neural Networks and Deep Learning; (ii) Improving Deep Neural Networks: Hyperparameter tuning, Regularization and Optimization; (iii) Structuring Machine Learning Projects; (iv) Convolutional Neural Networks;
vxh357's Repositories
vxh357/alphamissense
vxh357/ColabDesign
Making Protein Design accessible to all via Google Colab!
vxh357/ColabFold
Making Protein folding accessible to all!
vxh357/cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
vxh357/CPT
Cross-protein transfer learning for variant effect prediction
vxh357/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
vxh357/EVcouplings
Evolutionary couplings from protein and RNA sequence alignments
vxh357/dssp
Application to assign secondary structure to proteins
vxh357/dtu_mlops
Exercises and supplementary material for the machine learning operations course at DTU.
vxh357/dtu_mlops_mnist
vxh357/dtu_mlops_s1_final_exercise
vxh357/dtu_mlops_vxh357
This repository is a modified version of the DTU Machine Learning Operations course materials, featuring my personal solutions. Originally git cloned from https://github.com/SkafteNicki/dtu_mlops
vxh357/esm-variants
vxh357/gcp_docker_example
vxh357/git-commit-message
Git commit message: how to write a great git commit message and commit template for version control
vxh357/hgvs
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
vxh357/KULL_PRISM
Software development pipelines related to the PRISM project
vxh357/Machine-Learning-Specialization-Coursera
Contains Solutions and Notes for the Machine Learning Specialization By Stanford University and Deeplearning.ai - Coursera (2022) by Prof. Andrew NG
vxh357/ML-Course-Notes
🎓 Sharing machine learning course / lecture notes.
vxh357/mlops_template
vxh357/OmegaFold
OmegaFold Release Code
vxh357/plmc
Inference of couplings in proteins and RNAs from sequence variation
vxh357/PrimateAI-3D
vxh357/protein_bert
vxh357/ProteinMPNN
Code for the ProteinMPNN paper
vxh357/pylint
It's not just a linter that annoys you!
vxh357/pytorch_geometric
Graph Neural Network Library for PyTorch
vxh357/shephard
Sequence-based Hierarchical and Extendable Platform for High-throughput Analysis of Region of Disorder
vxh357/VariPred
This is the repository for the variant impact predictor VarIpred.
vxh357/VespaG
Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction