Pinned Repositories
Catalyst.jl
Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
CatalystNetworkAnalysis.jl
Network analysis algorithms for reaction networks modeled using Catalyst.jl
ModelingToolkit.jl
An acausal modeling framework for automatically parallelized scientific machine learning (SciML) in Julia. A computer algebra system for integrated symbolics for physics-informed machine learning and automated transformations of differential equations
aoc23
aoc24
audio-packets
Archive for audio quizbowl packets
Catalyst.jl
Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
JumpProcesses.jl
Build and simulate jump equations like Gillespie simulations and jump diffusions with constant and state-dependent rates and mix with differential equations and scientific machine learning (SciML)
mass-action-networks
A set of mass-action SBML networks for testing network analysis functionality on.
ReactionDiffusion
vyudu's Repositories
vyudu/ReactionDiffusion
vyudu/aoc23
vyudu/aoc24
vyudu/audio-packets
Archive for audio quizbowl packets
vyudu/Catalyst.jl
Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
vyudu/JumpProcesses.jl
Build and simulate jump equations like Gillespie simulations and jump diffusions with constant and state-dependent rates and mix with differential equations and scientific machine learning (SciML)
vyudu/mass-action-networks
A set of mass-action SBML networks for testing network analysis functionality on.
vyudu/ModelingToolkit.jl
An acausal modeling framework for automatically parallelized scientific machine learning (SciML) in Julia. A computer algebra system for integrated symbolics for physics-informed machine learning and automated transformations of differential equations
vyudu/OscillationCatalysis
vyudu/SciMLBenchmarks.jl
Scientific machine learning (SciML) benchmarks, AI for science, and (differential) equation solvers. Covers Julia, Python (PyTorch, Jax), MATLAB, R
vyudu/NonlinearSolve.jl
High-performance and differentiation-enabled nonlinear solvers (Newton methods), bracketed rootfinding (bisection, Falsi), with sparsity and Newton-Krylov support.
vyudu/OrdinaryDiffEq.jl
High performance ordinary differential equation (ODE) and differential-algebraic equation (DAE) solvers, including neural ordinary differential equations (neural ODEs) and scientific machine learning (SciML)
vyudu/rna-project
vyudu/SciMLBase.jl
The Base interface of the SciML ecosystem
vyudu/SymbolicIndexingInterface.jl
A general interface for symbolic indexing of SciML objects used in conjunction with Domain-Specific Languages
vyudu/SymbolicUtils.jl
Symbolic expressions, rewriting and simplification