Pinned Repositories
Twin-Airy_PSF_extended-volume_localization
Repository containing code accompanying "Twin-Airy point-spread function for extended-volume particle localization" paper
3d_from_2d
BOE_323258
Python code used for micro PIV analysis for the "3D + time blood flow mapping using SPIM-microPIV in the developing zebrafish heart " paper.
ClearMap-Debug
ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
documentation-theme-jekyll
A Jekyll-based theme designed for documentation and help systems. See the link for detailed instructions on setting up and configuring everything.
FisherInformation
Various Matlab code related to photon-statistics / Fisher Information Theory and microscopy
hacklab-training
Training syllabuses for Edinburgh Hacklab
handson-ml
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.
piv-gui-python
A Qt GUI for inspecting correlation matrices of PIV analysis. This GUI currently uses correlation data format of OpenPIV (www.openpiv.net).
stripe_elimination
MATLAB code from "Eliminating Stripe Artifactsin Light-Sheet Fluorescence Imaging"
vzickus's Repositories
vzickus/BOE_323258
Python code used for micro PIV analysis for the "3D + time blood flow mapping using SPIM-microPIV in the developing zebrafish heart " paper.
vzickus/piv-gui-python
A Qt GUI for inspecting correlation matrices of PIV analysis. This GUI currently uses correlation data format of OpenPIV (www.openpiv.net).
vzickus/stripe_elimination
MATLAB code from "Eliminating Stripe Artifactsin Light-Sheet Fluorescence Imaging"
vzickus/3d_from_2d
vzickus/ClearMap-Debug
ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
vzickus/documentation-theme-jekyll
A Jekyll-based theme designed for documentation and help systems. See the link for detailed instructions on setting up and configuring everything.
vzickus/FisherInformation
Various Matlab code related to photon-statistics / Fisher Information Theory and microscopy
vzickus/hacklab-training
Training syllabuses for Edinburgh Hacklab
vzickus/handson-ml
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.
vzickus/image-registration-summer-school-2018
Python notebooks and data for learning about image registration. Hosted at a summer school
vzickus/image_lddmm_tensorflow
Image mapping using the LDDMM algorithm, implemented in tensorflow
vzickus/image_overlay_animation
vzickus/ImperialTissueCyte
Resources for tissue imaging at Imperial College London.
vzickus/openpiv-ipywidget
Jupyter widget GUI for OpenPIV
vzickus/planets
vzickus/remote_refocus
A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Read the publication here: https://amsikking.github.io/remote_refocus/
vzickus/SPADsim
SPAD Simulation
vzickus/swc-hg-novice
Software Carpentry introduction to Mercurial for novices.