/W_NucleiSegmentation-ImageJ

BIAFLOWS workflow to segment clustered nuclei using a laplacian filter, thresholding and a binary watershed transform.

Primary LanguageDockerfile

IJSegmentClusteredNuclei

Segment nuclei in 2D images by Laplacian of Gaussian (user defined radius) and thresholding (user defined level) followed by binary watershed transform.

Integration with NEUBIAS web-based database of bioimage analysis tools

This workflow is described in www.biii.eu in http://biii.eu/nuclei-segmentation-2d-imagej