/ubuntu

Setting-up scripts for Ubuntu 20.04

Primary LanguageShellMIT LicenseMIT

Setting-up scripts for Ubuntu 20.04

The whole developing environment is based on Linuxbrew. Many of the following steps also work under macOS via Homebrew.

Linux specific scripts were placed in prepare/. This repo contains macOS related codes.

Bypass GFW blocking

  • Query the IP address on ipaddress for

    • raw.githubusercontent.com
    • gist.githubusercontent.com
    • camo.githubusercontent.com
    • user-images.githubusercontent.com

  • Add them to /etc/hosts or C:\Windows\System32\drivers\etc\hosts

Install packages needed by Linuxbrew and some others

echo "==> When some packages went wrong, check http://mirrors.ustc.edu.cn/ubuntu/ for updating status."
bash -c "$(curl -fsSL https://raw.githubusercontent.com/wang-q/ubuntu/master/prepare/1-apt.sh)"

Optional: adjusting Desktop

In GUI desktop, disable auto updates: Software & updates -> Updates, set Automatically check for updates to Never, untick all checkboxes, click close and click close again.

# Removes nautilus bookmarks and disables lock screen
echo '==> `Ctrl+Alt+T` to start a GUI terminal'
curl -fsSL https://raw.githubusercontent.com/wang-q/ubuntu/master/prepare/2-gnome.sh |
    bash

Install Linuxbrew

使用清华的镜像.

echo "==> Tuna mirrors of Homebrew/Linuxbrew"
export HOMEBREW_BREW_GIT_REMOTE="https://mirrors.tuna.tsinghua.edu.cn/git/homebrew/brew.git"
export HOMEBREW_CORE_GIT_REMOTE="https://mirrors.tuna.tsinghua.edu.cn/git/homebrew/homebrew-core.git"
export HOMEBREW_BOTTLE_DOMAIN="https://mirrors.tuna.tsinghua.edu.cn/homebrew-bottles"

git clone --depth=1 https://mirrors.tuna.tsinghua.edu.cn/git/homebrew/install.git brew-install
/bin/bash brew-install/install.sh

rm -rf brew-install

test -d ~/.linuxbrew && PATH="$HOME/.linuxbrew/bin:$HOME/.linuxbrew/sbin:$PATH"
test -d /home/linuxbrew/.linuxbrew && PATH="/home/linuxbrew/.linuxbrew/bin:/home/linuxbrew/.linuxbrew/sbin:$PATH"

if grep -q -i Homebrew $HOME/.bashrc; then
    echo "==> .bashrc already contains Homebrew"
else
    echo "==> Update .bashrc"

    echo >> $HOME/.bashrc
    echo '# Homebrew' >> $HOME/.bashrc
    echo "export PATH='$(brew --prefix)/bin:$(brew --prefix)/sbin'":'"$PATH"' >> $HOME/.bashrc
    echo "export MANPATH='$(brew --prefix)/share/man'":'"$MANPATH"' >> $HOME/.bashrc
    echo "export INFOPATH='$(brew --prefix)/share/info'":'"$INFOPATH"' >> $HOME/.bashrc
    echo "export HOMEBREW_NO_ANALYTICS=1" >> $HOME/.bashrc
    echo "export HOMEBREW_NO_AUTO_UPDATE=1" >> $HOME/.bashrc
    echo 'export HOMEBREW_BREW_GIT_REMOTE="https://mirrors.tuna.tsinghua.edu.cn/git/homebrew/brew.git"' >> $HOME/.bashrc
    echo 'export HOMEBREW_CORE_GIT_REMOTE="https://mirrors.tuna.tsinghua.edu.cn/git/homebrew/homebrew-core.git"' >> $HOME/.bashrc
    echo 'export HOMEBREW_BOTTLE_DOMAIN="https://mirrors.tuna.tsinghua.edu.cn/homebrew-bottles"' >> $HOME/.bashrc
    echo >> $HOME/.bashrc
fi

source $HOME/.bashrc

Download

Fill $HOME/bin, $HOME/share and $HOME/Scripts.

curl -LO https://raw.githubusercontent.com/wang-q/dotfiles/master/download.sh
bash download.sh
source $HOME/.bashrc

Install packages managed by Linuxbrew

Packages include:

  • Programming languages: Perl, Python, R, Java, Lua and Node.js
  • Some generalized tools
bash $HOME/Scripts/dotfiles/brew.sh
source $HOME/.bashrc

Attentions:

  • r and gnuplot have a lot of dependencies. Just be patient.

  • Sometimes there are no binary packages; compiling from source codes may take extra time.

Packages of each language

bash $HOME/Scripts/dotfiles/perl/install.sh

bash $HOME/Scripts/dotfiles/python/install.sh

bash $HOME/Scripts/dotfiles/r/install.sh

# Optional
# bash $HOME/Scripts/dotfiles/rust/install.sh

Bioinformatics Apps

bash $HOME/Scripts/dotfiles/genomics.sh

bash $HOME/Scripts/dotfiles/perl/ensembl.sh

# Optional: huge apps
# bash $HOME/Scripts/dotfiles/others.sh

Optional: dotfiles

bash $HOME/Scripts/dotfiles/install.sh
source $HOME/.bashrc

git clone https://github.com/VundleVim/Vundle.vim.git ~/.vim/bundle/Vundle.vim
vim +PluginInstall +qall

Edit .gitconfig to your own manually.

Directory Organization