Pinned Repositories
AHRD
High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
ALLHiC
ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
Ancestral_Genome_Reconstruction
Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
ANGeS
Reconstruction of ancestral genome maps
Cac_genome
Customized code/script for the paper
Chloroplast-genome-assembly
A pipeline for assemble chroloplast genome using short/long reads
dotPlotly
Generate an interactive dot plot from mummer or minimap alignments
gene_info
get information about the number of introns and the length of genes from the GFF3 file
GetOrganelle
Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
khaper
wangn-plant-bio's Repositories
wangn-plant-bio/Telomeres_and_Centromeres
This is a method to find telomeres and centromeres in plants.
wangn-plant-bio/GetOrganelle
Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
wangn-plant-bio/Setaria-pan-genome
Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- genome studies, as well as demographic and genetic studies of Setaria.
wangn-plant-bio/TGG
tomato graph pangenome
wangn-plant-bio/Chloroplast-genome-assembly
A pipeline for assemble chroloplast genome using short/long reads
wangn-plant-bio/ALLHiC
ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
wangn-plant-bio/Cac_genome
Customized code/script for the paper
wangn-plant-bio/AHRD
High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
wangn-plant-bio/seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
wangn-plant-bio/khaper
wangn-plant-bio/plotHicGenome
The tools are used for displaying hic signal of genome
wangn-plant-bio/Ancestral_Genome_Reconstruction
Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
wangn-plant-bio/dotPlotly
Generate an interactive dot plot from mummer or minimap alignments
wangn-plant-bio/ANGeS
Reconstruction of ancestral genome maps
wangn-plant-bio/gene_info
get information about the number of introns and the length of genes from the GFF3 file