Python code to generate interactive website: Mutation Tracker
Python code to 1) decode single site mutations from complete SARS-CoV-2 genomes, 2) decode protein-level mutations from MSA files. This is an collaboration projects with Dr. Changchuan Yin (cyin1@uic.edu). Temporary results are saved in /proteinPlot folder.
Code for binding free energy (BFE) change predictions of monoclonal antibodies binding to SARS-CoV-2 Spike protein. The zip file can be download from weilab server.
Python code to generate interactive website: Mutation Analyzer
Note: Complete files are saved on my server: wangru25@hpcc.msu.edu. Full code available upon request by the authors.