/SARS-CoV-2-Projects

Example code for SARS-CoV-2 projects, including code for SNP calling, website design, and predictive machien learning models.

Primary LanguagePython

SARS-CoV-2 Projects

Animation

Python code to generate interactive website: Mutation Tracker

MSA_SNP

Python code to 1) decode single site mutations from complete SARS-CoV-2 genomes, 2) decode protein-level mutations from MSA files. This is an collaboration projects with Dr. Changchuan Yin (cyin1@uic.edu). Temporary results are saved in /proteinPlot folder.

TopNetmAb

Code for binding free energy (BFE) change predictions of monoclonal antibodies binding to SARS-CoV-2 Spike protein. The zip file can be download from weilab server.

WebMutation

Python code to generate interactive website: Mutation Analyzer

Note: Complete files are saved on my server: wangru25@hpcc.msu.edu. Full code available upon request by the authors.