Pinned Repositories
ALLCools
Toolkit for single-cell DNA methylation analysis.
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
bwa-meth
fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
cemba_data
Mapping pipeline for snmC-seq based technologies.
DIALOGUE
DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map the cell transcriptome as a function of its environment.
ECHO
jupyter notebooks of the analysis in ECHO paper
epiVIA
Identify vector integration site with both bulk and single-cell epigenomic assays
sceQTL
Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)
SingleCellNotes
Notes about single cell technology and computational analysis methods, including but not limitted to Genome, Epigenome, Transcriptome, Morphology, Connectome and the integrative analysis of information from these layers.
TCF-1
wangwl's Repositories
wangwl/TCF-1
wangwl/ECHO
jupyter notebooks of the analysis in ECHO paper
wangwl/epiVIA
Identify vector integration site with both bulk and single-cell epigenomic assays
wangwl/SingleCellNotes
Notes about single cell technology and computational analysis methods, including but not limitted to Genome, Epigenome, Transcriptome, Morphology, Connectome and the integrative analysis of information from these layers.
wangwl/ALLCools
Toolkit for single-cell DNA methylation analysis.
wangwl/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
wangwl/bwa-meth
fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
wangwl/cemba_data
Mapping pipeline for snmC-seq based technologies.
wangwl/DIALOGUE
DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map the cell transcriptome as a function of its environment.
wangwl/sceQTL
Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)
wangwl/scHiCluster