/edna-at-risks-organisms

Takes in a list of species and returns those that are in the database with their abundances and sample locations.

Primary LanguagePython

eDNA At-risk Organism Finder

How it works

  • Reads the input csv file within the root folder.

  • Segments each csv line into individual terms.

  • Removes terms that will yield broad results.

  • uses the eDNA term query REST API to retrieve all abundance entries within the eDNA database.

  • When there are organism abundances present, write the abundance values corresponding to a site, organism, searched term and original csv input.