output bam file?

Question

output bam file?

jianshu93 opened this issue 2 years ago · 2 comments

Hello Team,

I am wondering whether wfmash can also generate bam file similar to that of minimap2. so that we can also use it as an reads mapper for many other applications.

thanks,

Jianshu

Answer 1 · 2023-01-14T05:35:57.000Z

Hi @jianshu93,
have you already played with the --sam-format option? What is missing?

Answer 2 · 2023-01-14T06:09:32.000Z

oh thanks！I will close this issue then and come back with more comparisons with minimap2.

Thanks，
Jianshu