waveygang/wfmash

Issues

• Problem installing wfmash with conda on mac

  #232 opened 9 months ago by rsharris
  6

• Fragmented genomes

  #291 opened 2 months ago by jianshu93
  0

• Run tests using `make test`

  #283 opened 2 months ago by arunisaac
  1

• v0.17.0 never complete

  #262 opened 5 months ago by jiadong324
  5

• AvA of ONT reads

  #281 opened 2 months ago by diego-rt
  0

• Invalid PAF files produced

  #273 opened 3 months ago by kdm9
  4

• all-vs-all mapping of ONT reads

  #276 opened 3 months ago by kokyriakidis
  0

• Incorrect CIGAR string generation in versions 0.16 through 0.21

  #270 opened 4 months ago by GRGong
  6

• invalid 2 field records introduced after inversion patching

  #263 opened 4 months ago by ASLeonard
  3

• Compiling on macOS for arm

  #265 opened 4 months ago by inspirewind
  0

• Assertion `queryLen <= querySize' failed

  #251 opened 6 months ago by shuai19910911
  1

• Illegal Instruction: wfmash:0.14.0 bioconda on linux container

  #250 opened 6 months ago by msgr0
  4

• BUILD_STATIC not used

  #249 opened 6 months ago by pickettbd
  0

• should query range be expanded for head/tail patching?

  #244 opened 7 months ago by ekg
  0

• wfmash seems much slower in `-Y #` mode compared to `-X`, although the input follows the PanSN-spec

  #241 opened 7 months ago by subwaystation
  0

• return 1.0d ?

  #226 opened 8 months ago by NullModel
  1

• queryLen <= querySize failed of wfmash

  #237 opened 8 months ago by baozg
  2

• Is linear synteny assumed?

  #233 opened 9 months ago by rsharris
  8

• parameter check for WFA?

  #230 opened 9 months ago by vpbrendel
  4

• Force global (a.k.a. end-to-end) alignment

  #203 opened a year ago by JingaJenga
  10

• too many alignments with v0.12.6

  #227 opened 10 months ago by subwaystation
  20

• wfmash killed

  #224 opened 10 months ago by mictadlo
  0

• Custom tags explanation

  #223 opened a year ago by sivico26
  1

• v0.12.5 emits more tabs than expected

  #221 opened a year ago by subwaystation
  2

• macOS arm compile error

  #139 opened a year ago by jianshu93
  0

• `Floating point exception (core dumped)`

  #218 opened a year ago by subwaystation
  2

• Flag logic in CMake is faulty

  #204 opened a year ago by zerothi
  0

• Parameters for large plant genome

  #202 opened a year ago by danielle-khost
  1

• Option `-P` leads to signal 8

  #200 opened a year ago by subwaystation
  1

• How to get `-A` to work?

  #199 opened a year ago by subwaystation
  3

• wfmash gets stuck (v0.9.1-3-gc5882a1: Mutamento)

  #173 opened a year ago by piosierra
  2

• please bring the current version v0.10.5 to Bioconda

  #193 opened a year ago by subwaystation
  3

• Compilation fails when I give cmake more than 1 thread

  #178 opened a year ago by subwaystation
  5

• Mapping rate decreasing with time

  #172 opened 2 years ago by cgroza
  3

• Compiling error

  #174 opened 2 years ago by xzhoubayer
  2

• Compilation erros with GCC v13.1

  #175 opened 2 years ago by subwaystation
  0

• possible memory leak?

  #171 opened 2 years ago by SarahBeecroft
  26

• Problem installing wfmash with conda

  #147 opened 2 years ago by VLoegler
  7

• output bam file?

  #168 opened 2 years ago by jianshu93
  2

• Segmentation fault

  #166 opened 2 years ago by shenwei356
  5

• Large unexpected insertion/deletion in alignments

  #161 opened 2 years ago by zhangrengang
  12

• Unexpected mapping with or without -X

  #146 opened 3 years ago by baozg
  1

• Bioconda package still on v0.9.1

  #162 opened 2 years ago by subwaystation
  1

• Compilation issue

  #154 opened 2 years ago by subwaystation
  13

• Insenstive fast run for large genomes

  #140 opened 3 years ago by xbarvazx
  1

• fastANI could also be updated based on this?

  #138 opened 3 years ago by jianshu93
  0

• Runtime much slower than minimap2 if using higher segement

  #137 opened 3 years ago by baozg
  4

• Artifacts on the edge of cigar strings

  #135 opened 3 years ago by mmolari
  4

• Run tests with a make check target

  #130 opened 3 years ago by arunisaac
  0

• do not use -march=native by default

  #127 opened 3 years ago by Millak
  1