Pinned Repositories
ABC-Enhancer-Gene-Prediction
Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
bioinfo-combio
The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
BL-HiChIP
This pipeline has been deprecated as of August 2021. Please update your pipelines to the official nextflow pipeline.
book
CodeAndStatistics
Learning statistics and coding practice
CoolBox
Jupyter notebook based genomic data visualization toolkit.
dealwithpdf
HiTag
HiTag: An optimized and flexible pipeline for Hi-Tag data processing
HiTag_paper
Code for the paper "Hi-Tag" published in "SCIENCE CHINA Life Sciences".
RNA-seq
scripts for RNA-seq
wbszhu's Repositories
wbszhu/deepC
A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence
wbszhu/HiC_data
A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.
wbszhu/HiC_tools
A collection of tools for Hi-C data analysis
wbszhu/In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
wbszhu/long-rna-seq-pipeline
STAR based ENCODE Long RNA-Seq processing pipeline
wbszhu/pairix
1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates
wbszhu/pandas-videos
Jupyter notebook and datasets from the pandas Q&A video series
wbszhu/scRNA-seq
wbszhu/sklearn-doc-zh
:book: [译] scikit-learn（sklearn） 中文文档
wbszhu/SNIPER
wbszhu/typora-theme-essay_cn
a theme for Typora(a markdown editor), designed for chinese essay
wbszhu/versioning_data_scripts-1
GitKraken lesson (forked from HBS-RCS)