No records for file in in 15_25576970_25685978!
Opened this issue · 3 comments
After some work I managed to use the github repo to get the right methplotlib version.
However my bedmethylfile looks like this:
15 25685968 25685969 h 12 + 25685968 25685969 255,0,0 12 0.00 0 0 12 0 2 1 0
15 25685968 25685969 m 12 + 25685968 25685969 255,0,0 12 100.00 12 0 0 0 2 1 0
15 25685969 25685970 h 12 - 25685969 25685970 255,0,0 12 8.33 1 0 11 0 1 0 1
15 25685969 25685970 m 12 - 25685969 25685970 255,0,0 12 91.67 11 0 1 0 1 0 1
15 25685976 25685977 h 14 + 25685976 25685977 255,0,0 14 0.00 0 0 14 0 1 0 0
15 25685976 25685977 m 14 + 25685976 25685977 255,0,0 14 100.00 14 0 0 0 1 0 0
15 25685977 25685978 h 14 - 25685977 25685978 255,0,0 14 0.00 0 1 13 0 0 0 0
15 25685977 25685978 m 14 - 25685977 25685978 255,0,0 14 92.86 13 1 0 0 0 0 0
I get an error saying there are no records, while clearly there are.
Also when I try another region, region X, of the same file, it works perfectly fine.
How to fix?
I use pod5 data, modbasecall it with dorado, next is modkit with function --only-tabs and then the methplotlib. So i have no influence on the names of first collumn
do you think it would be possible to share a bit of your file for me to test this?
I have emailed you!
In an different file i am also not able to find X