Pinned Repositories
depictio
Bioinformatics web-platform visualisation dashboard creation
mosaicatcher-pipeline
Integrated workflow for SV calling from single-cell Strand-seq data
ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
ashleys-qc-pipeline
Strand-Seq Quality Control Pipeline based on ashleys-qc
ashleys_qc_dash
Dash web server to monitor ashleys-qc runs output
bioconda-recipes
Conda recipes for the bioconda channel.
chat-gpt-starter
This is a Python Flask starter pack for a ChatGPT project that uses OpenAI API to create a ChatGPT chatbox.
MISTIC-public
snakemake_features
snakemake_tutorials
weber8thomas's Repositories
weber8thomas/MISTIC-public
weber8thomas/ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
weber8thomas/ashleys-qc-pipeline
Strand-Seq Quality Control Pipeline based on ashleys-qc
weber8thomas/ashleys_qc_dash
Dash web server to monitor ashleys-qc runs output
weber8thomas/bioconda-recipes
Conda recipes for the bioconda channel.
weber8thomas/dash-flask-login
Implementation of Flask-login on top of Dash.
weber8thomas/dash-pivottable
react-pivottable in Dash
weber8thomas/dash-playground
weber8thomas/depictio-dashboard
weber8thomas/depictio-LLM
weber8thomas/devcontainer_test
Devcontainer test
weber8thomas/dummy-actions-test
weber8thomas/github-actions-demo
a demo of GitHub actions for a simple React App
weber8thomas/mosaicatcher-pipeline
Integrated workflow for SV calling from single-cell Strand-seq data
weber8thomas/MultiPage_Dash
Using Dash Pages to create multi page dash app.
weber8thomas/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
weber8thomas/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
weber8thomas/NAHRwhals
R package and wrapper functions for identifying serial structural variations from genome assemblies
weber8thomas/panoptes-fastapi
Monitor computational workflows in real time
weber8thomas/pooled-strandseq-demultiplexing
Identification of Strand-Seq pooled libraries based on 1000G SNP genotyping
weber8thomas/rag-from-scratch
weber8thomas/smk-dummy-repo
weber8thomas/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
weber8thomas/snakemake-executor-plugin-slurm
A Snakemake executor plugin for submitting jobs to a SLURM cluster
weber8thomas/StrandPhaseR
R Package for phasing of single cell Strand-seq data
weber8thomas/strandscape
weber8thomas/StrandSeq-NO-pipeline
weber8thomas/test
weber8thomas/weber8thomas
weber8thomas/workspace-images
Ready to use docker images for Gitpod workspaces