/napari-trackastra

napari plugin for trackastra

Primary LanguagePythonBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

napari-trackastra

PyPI tests codecov napari hub

A napari plugin for cell tracking with trackastra.

demo

Installation

Install the latest version from PyPI with:

pip install napari-trackastra

For tracking with an integer linear program (ILP, which is optional), follow the installation instructions of the main trackastra package.

Notes:

  • On Windows currently only supported for Python 3.10.

Usage

  • trackastra expects a timeseries of raw images and corresponding segmentations masks as input.
  • We provide some demo data at File > Open Sample > trackastra.
  • Tracked cells can be directly saved to Cell Tracking Challenge format.
  • Results can be drag-and-dropped back into napari for inspection.