weihua74771

weihua74771's Stars

• micom-dev/micom

  Python package to study microbial communities using metabolic modeling.

  Language:Python9418

• AuReMe/metage2metabo

  From annotated genomes to metabolic screening in large scale microbiotas

  Language:Jupyter Notebook537

• KChen-lab/METAFlux

  Language:HTML489

• cnapy-org/CNApy-projects

  :world_map: A repository of CNApy projects

  Language:Tcl61

• pstjohn/emll

  some code for linlog model simulation

  Language:Jupyter Notebook96

• brianjamesschmidt/gim3e

  Gene Inactivation Moderated by Metabolism, Metabolomics, and Expression (COBRApy)

  Language:Python107

• EPFL-LCSB/pytfa

  A Python 3 implementation of Thermodynamics-based Flux Analysis

  Language:Python3827

• tibbdc/ETGEMs

  Language:Jupyter Notebook83

• cnapy-org/CNApy

  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

  Language:Python467

• Asplund-Samuelsson/POPPY

  Prospecting Optimal Pathways with PYthon: Tools for creating and exploring metabolic reaction networks.

  Language:Python41

• opencobra/cobrapy

  COBRApy is a package for constraint-based modeling of metabolic networks.

  Language:Python467218

• biobakery/biobakery

  bioBakery tools for meta'omic profiling

  Language:Shell26274

• nonstriater/Learn-Algorithms

  算法学习笔记

  Language:C8.4k2.4k

• meringlab/FlashWeave.jl

  Inference of microbial interaction networks from large-scale heterogeneous abundance data

  Language:Julia748

• krahets/hello-algo

  《Hello 算法》：动画图解、一键运行的数据结构与算法教程。支持 Python, Java, C++, C, C#, JS, Go, Swift, Rust, Ruby, Kotlin, TS, Dart 代码。简体版和繁体版同步更新，English version ongoing

  Language:Java101k12.7k

• geekxh/hello-algorithm

  🌍 针对小白的算法训练 | 包括四部分：①.大厂面经 ②.力扣图解 ③.千本开源电子书 ④.百张技术思维导图（项目花了上百小时，希望可以点 star 支持，🌹感谢~）推荐免费ChatGPT使用网站

  Language:Java35.3k6.5k

• posit-dev/py-shiny

  Shiny for Python

  Language:Python1.3k82

• kaixindelele/ChatPaper

  Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文全文总结+专业翻译+润色+审稿+审稿回复

  Language:Python18.5k1.9k

• binary-husky/gpt_academic

  为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。

  Language:Python66.1k8.1k

• striver-ing/wechat-spider

  开源微信爬虫：爬取公众号所有 文章、阅读量、点赞量和评论内容。易部署。持续维护！！！

  Language:Python2.4k605

• kelwyres/Bactabolize

  Language:Python35

• tamascogustavo/chimera

  Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.

  Language:HTML171

• LCSB-BioCore/COBREXA.jl

  Constraint-Based Reconstruction and EXascale Analysis

  Language:Julia439

• VorholtLab/i-At-LSPHERE

  Collection of genome-scale metabolic models, genomes, and scripts for At-LSPHERE bacterial culture collection

  Language:HTML73

• franciscozorrilla/metaGEM

  :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

  Language:Python20543

• franciscozorrilla/SymbNET

  Teaching materials for SymbNET course: from MAGs to GEMs

  Language:Jupyter Notebook133

• Gibbons-Lab/isb_course_2022

  Materials and presentation for the 2022 ISB Microbiome course.

  Language:Jupyter Notebook2713

• Gibbons-Lab/isb_course_2021

  Materials and presentations for the 2021 ISB Virtual Microbiome Series.

  Language:Jupyter Notebook2523

• Gibbons-Lab/isb_course_2020

  Materials and tutorials for the 2020 ISB Microbiome Course

  Language:Jupyter Notebook3028

• Gibbons-Lab/pipelines

  Pipelines used in the lab.

  Language:Nextflow113