weilandtd
Systems Biology researcher developing open software and methods to deceiver metabolism for healthcare and biotech applications.
Pinned Repositories
blood-gas
cobrapy
COBRApy is a package for constraint-based modeling of biological networks
competitive_catabolism
Models and analysis for the paper on competitive catabolism
DiffEqBiological.jl
DiffEq related functionality for defining biological models
E005-Circadian-Timecourse
EB_Kinetics2
This repository contains all code used in the following paper to describe reversible electron bifurcation with refilling. https://doi.org/10.1016/j.chempr.2021.03.016
ElMaven
LC-MS data processing tool for large-scale metabolomics experiments.
lactate_homeostasis
A reductionist whole-body model for lactate homeostasis
pysoscope
tca_fluxes
TCA Flux calculations for Bartman et al. Nature (2023)
weilandtd's Repositories
weilandtd/tca_fluxes
TCA Flux calculations for Bartman et al. Nature (2023)
weilandtd/pysoscope
weilandtd/blood-gas
weilandtd/cobrapy
COBRApy is a package for constraint-based modeling of biological networks
weilandtd/competitive_catabolism
Models and analysis for the paper on competitive catabolism
weilandtd/DiffEqBiological.jl
DiffEq related functionality for defining biological models
weilandtd/E005-Circadian-Timecourse
weilandtd/EB_Kinetics2
This repository contains all code used in the following paper to describe reversible electron bifurcation with refilling. https://doi.org/10.1016/j.chempr.2021.03.016
weilandtd/ElMaven
LC-MS data processing tool for large-scale metabolomics experiments.
weilandtd/lactate_homeostasis
A reductionist whole-body model for lactate homeostasis
weilandtd/MPI_Summer_School_Group_4
weilandtd/openfpm_pdata
Distributed data structure
weilandtd/pysb
Python framework for Systems Biology modeling
weilandtd/pytfa
A Python 3 implementation of Thermodynamics-based Flux Analysis
weilandtd/rab_jp
Code for junior paper under supervision of Joshua Rabinowitz
weilandtd/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
weilandtd/SURFtools
weilandtd/sympler
SYMPLER: SYMbolic ParticLE simulatoR
weilandtd/yeast-GEM
The consensus GEM for Saccharomyces cerevisiae