Pinned Repositories
-MR-wgcnaPHESANT
PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
BEYOND_DLPFC
Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease
bulk-rnaseq-analysis
A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression analysis using DESeq2, using example data from Guo et al. 2019.
CellAnnotationTutorial
Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
Chinese-STD-GB-T-7714-related-csl
GB/T 7714相关的csl以及Zotero使用技巧及教程。
imcyto
Image Mass Cytometry analysis pipeline
ivonesamplemr
Stata package for one-sample Mendelian randomization / instrumental variable analyses
Lesson-Crawler
使用Python3爬取题库-聚合在线教育平台（http://i.sxmaps.com）
LUAD_Code20240601
test
MASLD-NASH-
scripts associated with NAFLD-NASH project
weizhendi's Repositories
weizhendi/-MR-wgcnaPHESANT
PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
weizhendi/BEYOND_DLPFC
Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease
weizhendi/CellAnnotationTutorial
Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
weizhendi/Chinese-STD-GB-T-7714-related-csl
GB/T 7714相关的csl以及Zotero使用技巧及教程。
weizhendi/imcyto
Image Mass Cytometry analysis pipeline
weizhendi/ivonesamplemr
Stata package for one-sample Mendelian randomization / instrumental variable analyses
weizhendi/LUAD_Code20240601
test
weizhendi/MASLD-NASH-
scripts associated with NAFLD-NASH project
weizhendi/scPDAC-test628
R code used to analyze single cell PDAC data
weizhendi/single-cell-tutorial2024627
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
weizhendi/SingleCellCRC-pipelinetest
Analytical pipeline of scRNA-seq and spatial transcription datastes of CRC
weizhendi/-EENT-ONB
scRNA-seq analysis of EENT-ONB
weizhendi/-spatial-bonemarrow-atlas
This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Proteomic Profiling Reveals the Cellular Composition and Spatial Organization of the Human Bone Marrow Microenvironment"
weizhendi/admultiregion_analysis
Code repository for single-cell atlas of Alzheimer's disease progression across brain regions多区域，多变量，多分组比较多
weizhendi/ANCA-GN_transcriptomics
生信药物预测Contains code to analyse the data from the paper: Immune profiling-based targeting of pathogenic T cells with ustekinumab in ANCA-associated glomerulonephritis
weizhendi/HE-space-IGI-DL-colon-cancer-breast_skin
Code for ST_IGI package
weizhendi/MendelRookiewzd
新手友好的孟德尔随机化项目
weizhendi/metabolicStateVulnerabilities
代谢组学到数据分析Multivariate analysis of metabolic state vulnerabilities across diverse cancer contexts reveals synthetically lethal associations
weizhendi/mrrobust
Stata package for two-sample Mendelian randomization analyses using summary data
weizhendi/mysingleCellTK
Interactively analyze single cell genomic data
weizhendi/omicsgenetraitassociation
A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis
weizhendi/omicverse
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
weizhendi/PheWAS-cluster
weizhendi/PRnet
预测新化合物在多种未曾测试的细胞系和通路中的表现PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturbations at bulk and single-cell levels.
weizhendi/proteome-phenome-atlas
蛋白质组学的数据分析流程-结合MR+机器学习模型（诊断+预测）
weizhendi/Retinol_GWAS_code
Scripts for the Reay et al. GWAS of circulating retinol
weizhendi/scalop
一般流程Single Cell Analysis Operations
weizhendi/SPATAC-seq
单细胞染色质可及性测序（scATAC-seq）和多组学联合分析
weizhendi/WES-analysis
weizhendi/wzd-analysis-TAGADA
GENE-SWitCH project RNA-Seq analysis pipeline