Wells Wood Research Group
Software developed by the Wells Wood Research Group, University of Edinburgh
Edinburgh, Scotland.
Pinned Repositories
alphafold2-multiprocessing
Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing
aposteriori
DNN based protein design.
BAlaS
Source code for the BUDE Alanine Scan web application.
de-stress
DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
drMD
Molecular Dynamics for Experimentalists
isambard
Intelligent System for Analysis, Model Building And Rational Design of biomolecules.
oshea-j-interface-engineering-2021
PDBench
PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
protein-design-archive
Source code for The Protein Design Archive web application.
timed-design
Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
Wells Wood Research Group's Repositories
wells-wood-research/timed-design
Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
wells-wood-research/PDBench
PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
wells-wood-research/drMD
Molecular Dynamics for Experimentalists
wells-wood-research/alphafold2-multiprocessing
Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing
wells-wood-research/de-stress
DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
wells-wood-research/BAlaS
Source code for the BUDE Alanine Scan web application.
wells-wood-research/aposteriori
DNN based protein design.
wells-wood-research/chronowska-stam-wood-2024-protein-design-archive
Code supporting the Protein Design Archive (PDA) database publication
wells-wood-research/oshea-j-interface-engineering-2021
wells-wood-research/galloway-jg-hairpin-self-assembly-2020
Scripts and data for running particle analysis on AFM data
wells-wood-research/ProteinMPNN_custom_training
Scripts for training ProteinMPNN with a custom dataset and other utils
wells-wood-research/drFrankenstein
Fast Parameterisation of Complex Molecules for the AMBER forcefield
wells-wood-research/elm-molecules
An Elm package for working with molecular structure.
wells-wood-research/isambard
Intelligent System for Analysis, Model Building And Rational Design of biomolecules.
wells-wood-research/protein-design-archive
Source code for The Protein Design Archive web application.
wells-wood-research/stam-m-wood-c-de-stress-2021
wells-wood-research/TTSCP_L102C_DSB-MBnThz-vs-TTSCP_L102C_DDSB-MBnThz
wells-wood-research/ampal
A simple, intuitive and Pythonic framework for representing biomolecular structure.
wells-wood-research/ccbuilder2
A web application for atomistic modelling of coiled coils and collagens.
wells-wood-research/stam-m-large-scale-analysis-2024
wells-wood-research/adaptyv-bio-analysis
wells-wood-research/oshea-j-wood-c-pbp-design-2023
wells-wood-research/pdb-compare
wells-wood-research/pollen
wells-wood-research/pv
WebGL protein viewer
wells-wood-research/wells-wood-research.github.io
Group website.