How to open the files produced by MSFragger?
Closed this issue · 3 comments
ZhangXiangye commented
Hello,
We are running the PDV-1.7.3 to open the files produced by MSFragger.
But we can only open the file called "psm.tsv". However, the data we need was stored in the "global.modsummary.tsv" or "modifications.tsv". Could you please tell me if the PDV could open such files?
Thank you in advance.
ZXY.
KaiLiCn commented
Hi,
Sorry, PDV now only supports the "psm.tsv" file as the input. If you want to know more detail about your search result, you can find the *.pep.xml result file exported by MSFragger. PDV supports the *.pep.xml file as the input file.
Kai
ZhangXiangye commented
Hi Kai,
Thanks for your reply, I’ve find the *.pep.xml as you suggested, and it works!
Have a great day!
ZXY
发自我的iPhone
…------------------ Original ------------------
From: KaiLiCn ***@***.***>
Date: Sun,Jun 13,2021 0:33 PM
To: wenbostar/PDV ***@***.***>
Cc: Shane ***@***.***>, Author ***@***.***>
Subject: Re: [wenbostar/PDV] How to open the files produced by MSFragger? (#24)
KaiLiCn commented
Great! Please feel free to start a new issue if you meet any new problem.
Kai