wenjie1991/barcode-simulation

pcr-simulation

The tiny naughty program is used to generate null hypothesis distribution of barcode frequency for lineage tricing. And adding the noise into the barocde.

Build from source code

Install the rustup tool chains.

Use cargo to build the program.

cargo build --release

Usage

cargo run --release -- --n-cycle 25 \
    --efficiency-mean 0.5 \
    --efficiency-sd 0.2 \
    --mutation-rate 0.00001 \
    --out-prefix ./tests/pcr \
    --template ./tests/dna_template.txt