/PubMedMetrics

Primary LanguagePythonMIT LicenseMIT

PubMedMetrics

This is a program that can query from PubMed, store the results to database for later ranking. It uses Altmetric to rank them.

Installation (Ubuntu)

sudo apt update
sudo apt install python python-dev
wget https://bootstrap.pypa.io/get-pip.py
sudo python get-pip.py
pip install --upgrade virtualenv
virtualenv pmm
source pmm/bin/activate
pip install .

Run

usage: main.py [-h] [-c CONFIG] [-o OUTPUT] [-d DAYS]

optional arguments:
  -h, --help            show this help message and exit
  -c CONFIG, --config CONFIG
                        Configuration for querying
  -o OUTPUT, --output OUTPUT
                        Output file name of the fetched papers
  -d DAYS, --days DAYS  Number of days of looking back

Credits

  • Denis Odinokov
  • Wenwei Huang

License

MIT License