wenwenmin

ABPL

Globally Convergent Accelerated Block Proximal Method with Adaptive Momentum for Nonconvex Optimization

HisToSGE

High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)

MACD

Masked adversarial neural network for cell type deconvolution (MACD) in spatial transcriptomics data

scstGCN

A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expression by integrating multimodal information.

SpaDiT

SpaDiT: Diffusion Transformer for Spatial Gene Expression Prediction using scRNA-seq

SpaLLM

Large Language Models for Spatial Transcriptomics Analysis

STAHistologyImages

Histology Images Inspired Spatial Transcriptome Analysis

STMGAC

Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data

wenwenmin.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

mclSTExp

mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images

wenwenmin/scstGCN

A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expression by integrating multimodal information.

wenwenmin/SpaDiT

SpaDiT: Diffusion Transformer for Spatial Gene Expression Prediction using scRNA-seq

wenwenmin/STMGAC

Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data

wenwenmin/MACD

Masked adversarial neural network for cell type deconvolution (MACD) in spatial transcriptomics data

wenwenmin/HisToSGE

High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)

wenwenmin/scASDC

scASDC is an attention enhanced structural deep clustering method for scRNA-seq cell clustering

wenwenmin/mbVDiT

Pretrained-Guided Masked Conditional Diffusion Models for Microbiome Data Analysis

wenwenmin/SpatialCVGAE

We propose SpatialCVGAE, which uses multiple variational graph autoencoders with different initializations to simultaneously generate corresponding low-dimensional embeddings, and then utilizes consensus clustering.

wenwenmin/STG3Net

We propose STG3Net, a novel method designed to integrate multiple SRT datasets and correct batch effects.

wenwenmin/SpaLLM

Large Language Models for Spatial Transcriptomics Analysis

wenwenmin/STMVGAE

Deep Clustering Representation for Spatially Resolved Transcriptomics Data via Multi-view Variational Graph Auto-Encoders with Consensus Clustering

wenwenmin/ABPL

Globally Convergent Accelerated Block Proximal Method with Adaptive Momentum for Nonconvex Optimization

wenwenmin/SpaDAMA

Domain-Adversarial Masked Autoencoder (SpaDAMA) for cell type deconvolution in spatial transcriptomics data

wenwenmin/SpaMask

SpaMask: Dual Masking Graph Autoencoder with Contrastive Learning for Spatial Transcriptomics

wenwenmin/SpaViT

A self-supervised learning method with Vision Transformer as backbone network for resolution enhancement in spatial transcriptomics.

wenwenmin/VTrans

VTrans: A VAE-based Pre-trained Transformer Method for Microbiome Data Analysis

wenwenmin/CAVAE

Multimodal Co-Attention-based VAE deep learning framework

wenwenmin/MAVAE

wenwenmin/STAHistologyImages

Histology Images Inspired Spatial Transcriptome Analysis

wenwenmin/STMask

wenwenmin/stMCDI

Masked Conditional Diffusion Model with Graph Neural Network for Spatial Transcriptomics Data Imputation

wenwenmin/TSCCA

PLOS Computational Biology, DOI: 10.1371/journal.pcbi.1009044, TSCCA: A tensor-based method for new discovery of cancer-miRNA-gene patterns from multiple cancers.

wenwenmin/wsPLS

Min Wenwen et al., Weighted Sparse Partial Least Squares for Joint Sample and Feature Selection

wenwenmin/SpaMGAC

SpaMGAC: Masked Graph Autoencoders with Contrastive Augmentation for Spatially Transcriptomics Data Analysis

wenwenmin/STMCL

STMCL: Leveraging AI to Infer Spatial Gene Expression from Histological Data

wenwenmin/TransVCOX

wenwenmin/wenwenmin.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

wenwenmin/L0GSNTD

wenwenmin/SGNCP

Sparse nonnegative CP decomposition

wenwenmin/scib

Benchmarking analysis of data integration tools