wgiese

wgiese's Stars

• langchain-ai/langchain

  🦜🔗 Build context-aware reasoning applications

  Language:Jupyter Notebook93.7k6867.8k15.1k

• scikit-learn/scikit-learn

  scikit-learn: machine learning in Python

  Language:Python59.8k2.1k11.2k25.4k

• facebookresearch/segment-anything

  The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

  Language:Jupyter Notebook47.2k3056645.6k

• pyg-team/pytorch_geometric

  Graph Neural Network Library for PyTorch

  Language:Python21.2k2523.5k3.6k

• fastapi/typer

  Typer, build great CLIs. Easy to code. Based on Python type hints.

  Language:Python15.6k78329664

• albumentations-team/albumentations

  Fast and flexible image augmentation library. Paper about the library: https://www.mdpi.com/2078-2489/11/2/125

  Language:Python14.1k1291k1.6k

• mehdihadeli/awesome-software-architecture

  🚀 A curated list of awesome articles, videos, and other resources to learn and practice software architecture, patterns, and principles.

  8k11815634

• bowang-lab/MedSAM

  Segment Anything in Medical Images

  Language:Jupyter Notebook2.9k20287398

• mistralai/mistral-finetune

  Language:Python2.7k3737223

• napari/napari

  napari: a fast, interactive, multi-dimensional image viewer for python

  Language:Python2.2k463k422

• royerlab/napari-chatgpt

  A napari plugin to process and analyse images with chatGPT!

  Language:CSS243102326

• BiAPoL/Bio-image_Analysis_with_Python

  Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Technology, TU Dresden

  Language:Jupyter Notebook197191047

• royerlab/napari-segment-anything

  Segment Anything Model (SAM) native Qt UI

  Language:Python19071817

• FZJ-INM1-BDA/celldetection

  Scalable Instance Segmentation using PyTorch & PyTorch Lightning.

  Language:Python12371821

• zeitstein/brimm

  Notion-inspired versatile knowledge management backed by a graph you own, full stack and open source.

  991300

• RUB-Bioinf/VesselExpress

  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes

  Language:Python405105

• Janelia-Trackathon-2023/traccuracy

  Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth

  Language:Python254697

• glencoesoftware/NGFF-Converter

  NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF

  Language:Java2112287

• ComplexOrganizationOfLivingMatter/Epithelia3D

  "Scutoids are a geometrical solution to three-dimensional packing of epithelia" - https://www.nature.com/articles/s41467-018-05376-1.

  Language:MATLAB11413

• rhythm-patel/sqlalchemy-workshop-postgres

  SQLAlchemy asyncio workshop demo project with Postgres for PyCon Germany 2024

  Language:Python96

• weigertlab/napari-spotiflow

  Spotiflow plugin for napari

  Language:Python9200

• kephale/napari-tyssue

  This is a napari plugin that supports the 3D tissue simulator, tyssue

  Language:Python6331

• Honigmann-Lab-BIOTEC/Tight-junctions-control-lumen-morphology-via-hydrostatic-pressure-and-junctional-tension

  Language:MATLAB3100

• haesleinhuepf/spheri

  A library for feature extraction from 3D label images

  Language:Python220

• kephale/naparAI

  A LLM support plugin for napari

  Language:Python2

• polarityjam/polarityjam-napari-plugin

  Language:Python211

• felixniemeyer/ai-mediator-telegram-bot

  Language:TypeScript1200

• haesleinhuepf/SAMJ-IJ

  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.

  Language:Java100

• monahton/2023-12-05-unipv

  Language:HTML10

• polarityjam/polarityjam-app

  Language:R1