Pinned Repositories
alphafold
Open source code for AlphaFold.
arriba
Fast and accurate gene fusion detection from RNA-Seq data
CharGer
Characterization of Germline variants
clusterProfiler
:bar_chart: statistical analysis and visualization of functional profiles for genes and gene clusters
clusterProfiler-book
a complete reference book for clusterProfiler and its sub-packages
ctat-mutations
Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
Deep-Image-Analogy
A linux version support for multiple images as input, based on https://github.com/msracver/Deep-Image-Analogy/tree/linux
DeepLC
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
Denovo-Proteogenomics-Pipeline
Denovo Proteogeomics pipeline to identify clinically relevent novel variants from RNAseq and Proteomics data.
denovogui
Graphical user interface for de novo sequencing of tandem mass spectra
whiffen-cann's Repositories
whiffen-cann/alphafold
Open source code for AlphaFold.
whiffen-cann/arriba
Fast and accurate gene fusion detection from RNA-Seq data
whiffen-cann/CharGer
Characterization of Germline variants
whiffen-cann/clusterProfiler
:bar_chart: statistical analysis and visualization of functional profiles for genes and gene clusters
whiffen-cann/clusterProfiler-book
a complete reference book for clusterProfiler and its sub-packages
whiffen-cann/ctat-mutations
Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
whiffen-cann/Deep-Image-Analogy
A linux version support for multiple images as input, based on https://github.com/msracver/Deep-Image-Analogy/tree/linux
whiffen-cann/DeepLC
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
whiffen-cann/Denovo-Proteogenomics-Pipeline
Denovo Proteogeomics pipeline to identify clinically relevent novel variants from RNAseq and Proteomics data.
whiffen-cann/denovogui
Graphical user interface for de novo sequencing of tandem mass spectra
whiffen-cann/Glyco_MsSLASH
whiffen-cann/immunopeptidogenomics
Tools for harnessing RNA-seq data to discover cryptic peptides in the immunopeptidome by mass spectrometry
whiffen-cann/ms2rescore
Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
whiffen-cann/msSLASH
Spectral library searching tool based on locality sensitive hashing
whiffen-cann/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
whiffen-cann/RNAseq-workflow
A repository for setting up a RNAseq workflow
whiffen-cann/RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold
whiffen-cann/scRNASeqPipeline
whiffen-cann/searchgui
Highly adaptable common interface for proteomics search and de novo engines
whiffen-cann/tensorflow
Computation using data flow graphs for scalable machine learning
whiffen-cann/ThermoRawFileParser
Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono
whiffen-cann/warp
WDL Analysis Research Pipelines