/Hi-C-Browser-D3

A Hi-C Map Data Visualization Powered by D3.JS

Primary LanguageJavaScriptApache License 2.0Apache-2.0

Hi-C Browser


A Hi-C Map Data Visualization Powered by D3.JS

Install

git clone or vist here

How to Use

Step 1

Convert Hi-C Pro output .matrix to .csv format

tr '\t' ',' < your_output.matrix > out.csv
echo 'group,variable,value' | cat - out.csv > temp && mv temp out.csv

out.csv will be ready to visualization. Test CSV Data

Step 2

Upload the .csv file , well done!

image

Reference

Dixon, J. R., Selvaraj, S., Yue, F., Kim, A., Li, Y., Shen, Y., Hu, M., Liu, J. S., & Ren, B. (2012). Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature, 485(7398), 376–380. https://doi.org/10.1038/nature11082

Bootstrap,https://getbootstrap.com/