widdowquinn
I'm a computational biologist, working at the University of Strathclyde, in Glasgow.
University of StrathclydeGlasgow, Scotland
Pinned Repositories
2018-03-06-ibioic
Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.
find_differential_primers
Code for design of diagnostic PCR primers, and metabarcoding markers.
pyani
Application and Python module for average nucleotide identity analyses of microbes.
scripts
Miscellaneous scripts
Teaching
Code and files used in teaching and training courses.
Teaching-Stan-Hierarchical-Modelling
Jupyter notebooks for teaching hierarchical Bayesian modelling with Stan
ten_great_papers
Ten great papers for wet lab biologists starting out in computational biology
widdowquinn's Repositories
widdowquinn/pyani
Application and Python module for average nucleotide identity analyses of microbes.
widdowquinn/find_differential_primers
Code for design of diagnostic PCR primers, and metabarcoding markers.
widdowquinn/pilercrpy
Python package for interacting with PILER-CR CRISPR repeat finding output.
widdowquinn/sync_rifftrax
Notes on synchronising RiffTrax Just the Jokes with a movie.
widdowquinn/ncfp
Program and package that retrieves nucleotide coding sequences from NCBI that correspond to a set of input protein sequences.
widdowquinn/SI_Hugouvieux-Cotte-Pattat_2021
Supplementary information for pyani analyses reported in Hugouvieux-Cotte-Pattat et al. (2021) IJSEM, describing the novel genus Paradisiaca
widdowquinn/Teaching-SWC-Lessons
Lesson materials I have used when teaching Software Carpentry
widdowquinn/2021-01-13_sipbs_workshop
This repository provides a website and MyBinder-based interactive workshop for the 2021 SIPBS Research Day, on using Python to query UniProt.
widdowquinn/BMC-database
Space designed to create the Bacterial microcompartment database. Template egg-shell created for begginers.
widdowquinn/ideel
Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
widdowquinn/stacs-thesis
A LaTex class for writing theses and dissertations. Includes a skeletal thesis customised to University of St Andrews.
widdowquinn/aoc2015
Solutions and data for Advent of Code 2015
widdowquinn/aoc2020
Advent of Code solutions and data for 2020
widdowquinn/aoc2021
solutions and attempted solutions for Advent of Code 2021: https://adventofcode.com/2021
widdowquinn/aoc2022
Code/solutions for Advent of Code 2022
widdowquinn/aoc2023
Advent of Code 2023 solutions
widdowquinn/aws_delete_vault
Program to delete all archives in an AWS S3 Glacier vault - a prerequisite to deleting the vault itself
widdowquinn/bioconda-recipes
Conda recipes for the bioconda channel.
widdowquinn/example_MSc_2022
Demonstration repository for MSc projects
widdowquinn/lptwitdelete
Script and package to delete Twitter statuses.
widdowquinn/pdfcomments
widdowquinn/picluster-ansible
This repository contains the Ansible Playbooks used for my Pi Cluster project.
widdowquinn/planets
Example repository for Carpentries lesson
widdowquinn/shellshare
A modified version of Vitor Baptista's Shellshare: https://github.com/vitorbaptista/shellshare, that is useful for running remote programming tutorials when there might be several shellshare windows to keep track of.
widdowquinn/SI_Holmes_etal_2020
Supplementary information for Holmes et al. (2020)
widdowquinn/SI_Kamat_et_al_Clostridium_diversity
Supplementary information for the Kamat _et al._ paper "Genomic diversity of novel strains of mammalian gut microbiome derived _Clostridium_ XIVa strains is driven by mobile genetic element acquisition"
widdowquinn/tayport-community-website
A community website project
widdowquinn/widdowquinn
widdowquinn/widdowquinn.github.io
Widdowquinn's website.
widdowquinn/zfcc