Program for oxygen phenotype assignment based on proteome sequences
- Python2.7
- scikitlearn
- Biopython
- numpy
- pandas
Specify input, Blast, and number of Blast threads (>1 for faster execution) in SETTINGS file, eg.
INPUT_FILE=UP000245539_1247513.fasta
BLAST_PATH=/usr/local/ncbi/blast/bin
NUM_THREADS=2
Run oxyphen with a proteome of choice as an input: python oxyphen.py
In case of any problems, feel free to contact me at: jagoda.jablonska@weizmann.ac.il